YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109506876, gi...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKAVQPPEP FPEMAYLTWL LAILHVHKAL CEETLWDTTV RLSETMTLEC VYPLTDNLTQ  60
   61 AEWTKDTGTK KVNIAVYHPN HNMHIDPNYL HRVHFQNATV GFRNMSLSFY NASEADIGIY 120
  121 TCLFHAFPRG SWEKKIKVVQ SDSFETTAPL DSYLSAEPGQ NVTLSCQLER TWLVQLVIWE 180
  181 KVQPHQVDIL ASCNLSQGTR YTSKYLRQTW SDCSQESMKS ALIIPYAMAA DSGLYRCRSE 240
  241 ASTGTNKTCV IRLIITDGGT NNHFILLIVG GLASLLLVIL ITIIIILFNR KRRRQVRTPL 300
  301 KELRDKQSKV ATNCRSPTSP IQTTDDEKED IYVNYPTFSR RPKPRF

Type	Start	End	Confidence
Non-Cytoplasmic	1	263	0.91
Transmembrane Helix	264	288	0.92
Cytoplasmic	289	346	0.97