YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109506076
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAENEFMMQ QHMPVATPVC YPRGPRMLNV KPTEQRCVKY TVGTEFEGAV IALFHLLATR  60
   61 TDKVRALREA FYRQNLPNLM NLIATVFVFA VVIYFQGFRV DLPIKSARYR GQYSSYPIKL 120
  121 FYTSNIPIIL QSALVSNLYV ISQMLSVRFS GNFLVNLLGQ WADVSGGGPA RSYPVGGLCY 180
  181 YLSPPESMGA IFEDPVHVVV YIIFMLGSCA FFSKTWIEVS GSSAKDVAKQ LKEQQMVMRG 240
  241 HRDTSMVHEL NRYIPTAAAF GGLCIGALSV LADFLGAIGS GTGILLAVTI IYQYFEIFVK 300
  301 EQAEVGGMGA LFF

Type	Start	End	Confidence
Cytoplasmic	1	75	0.66
Transmembrane Helix	76	98	0.86
Non-Cytoplasmic	99	119	0.55
Transmembrane Helix	120	141	0.79
Cytoplasmic	142	148	0.41
Transmembrane Helix	149	164	0.35
Non-Cytoplasmic	165	196	0.71
Transmembrane Helix	197	217	0.84
Cytoplasmic	218	251	0.86
Transmembrane Helix	252	271	0.83
Non-Cytoplasmic	272	275	0.53
Transmembrane Helix	276	295	0.79
Cytoplasmic	296	313	0.69