YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109505457
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQYFHHNPV RVKSSSLFGT ASVALHAKLS QYKRRDKQCQ AFFRKVTKST LFQILMITTV  60
   61 TANSFLLVLG TNYDIHFRMF RVFEFLMKVY VDPITYWKDG YNILDVVILV IITIPYFLRK 120
  121 IKGNHFEYLH FADGIQSLRV LKLISYSRGI RTLIIAVGET VYTVASVLTL LFLLMFVFAI 180
  181 LGFCLFGNAD RGDLTNWGNL AAAFFTLFSL ATVDGWTNLQ EELDKRKFTV SRAFTILFIL 240
  241 LASFIFLNMF VGVMIMHTED SIKKFEREMT LERNLALMEE KQMILRRQQD EVNRLMNTQK 300
  301 VGGKSFVEMV EGFKRTLRHT DPMVLDEFCT SLSFIDIYLD TLDNQDVIVS KLQELYYEIA 360
  361 NVLNLMLEDM PPREKSSSTL ES

Type	Start	End	Confidence
Cytoplasmic	1	50	0.79
Transmembrane Helix	51	71	0.93
Non-Cytoplasmic	72	99	0.90
Transmembrane Helix	100	118	0.90
Cytoplasmic	119	159	0.85
Transmembrane Helix	160	185	0.84
Non-Cytoplasmic	186	196	0.74
Transmembrane Helix	197	217	0.89
Cytoplasmic	218	233	0.75
Transmembrane Helix	234	257	0.91
Non-Cytoplasmic	258	382	0.86