YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MF14B_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.83
Transmembrane Helix	47	69	0.84
Non-Cytoplasmic	70	84	0.68
Transmembrane Helix	85	105	0.84
Cytoplasmic	106	112	0.67
Transmembrane Helix	113	131	0.80
Non-Cytoplasmic	132	136	0.71
Transmembrane Helix	137	158	0.93
Cytoplasmic	159	168	0.87
Transmembrane Helix	169	191	0.91
Non-Cytoplasmic	192	198	0.84
Transmembrane Helix	199	219	0.96
Cytoplasmic	220	253	0.94
Transmembrane Helix	254	271	0.92
Non-Cytoplasmic	272	289	0.75
Transmembrane Helix	290	311	0.90
Cytoplasmic	312	321	0.78
Transmembrane Helix	322	340	0.92
Non-Cytoplasmic	341	346	0.76
Transmembrane Helix	347	368	0.93
Cytoplasmic	369	383	0.89
Transmembrane Helix	384	407	0.85
Non-Cytoplasmic	408	428	0.94
Transmembrane Helix	429	451	0.88
Cytoplasmic	452	507	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTDGESPEE PGWKAVASPK ASAMPEKRGS AQAASSSWLQ GFGQPSVYHA AFVIFFEFFA  60
   61 WGLLTTPMLT VLHETFPQHT FLMNGLIQGV KGLLSFLSAP LIGALSDVWG RKPFLLGTVF 120
  121 FTCFPIPLMR ISPWWYFGMI SVSGVFSVTF SVIFAYVADF TQEHERSTAY GWVSATFAAS 180
  181 LVSSPAIGTY LSSNYGDSLV VLVATVVALL DICFILVAVP ESLPEKIRPA SWGAQISWKQ 240
  241 ADPFASLKKV GKDSTVLLIC ITVFLSYLPE AGQYSSFFLY LRQVIGFGSV KIVAFIAMVG 300
  301 ILSILAQTVF LSKLMRSLGN KNTVLLGLGF QILQLAWYGF GAQAWMMWAA GTVAAMSSIT 360
  361 FPAVSALISR NAESDQQGVA QGIITGIRGL CNGLGPALYG FIFYLFHVEL NELGPKLDSD 420
  421 NDPLQGAFIP GPPFLFGACI VLMSFLVALF IPEYRKTGGV QKHNNSISGS LSTPPERGSD 480
  481 EDIEPLLQDS NIWELSSEEP GNQCTEL