YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109504832
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSEVLADQS IVCLQKALTH LREKRELIGI PEEQRLQRTD VVKKHIMDLL GSTIAEEESP  60
   61 QKFMEYVTER WELHQLEKER TKQERQLKNK IQTEMLYGNA LWTPSKRPGQ TPNESGKTLP 120
  121 DGQDPTSEYG GACARGRNSR GPAKGAGPHA GARAKRRIGG SGARCPACGD LPGRWRPRWR 180
  181 SREQDRRQVD AEEAQPARRG PAVEKSRDKV AGLECGKAET MDLKFNNSRK YVSITVPSKT 240
  241 QTMSPHIKSV EDVVVLGVNL SRFKKLTQFL ICVAGVFVFY LIYGYLQELI FSMEGFKPYG 300
  301 WYLTLVQFAF YSVFGLIELQ LTQDKRRRIP GKTYMIIAFL TVGTMGLSNT SLGYLNYPTQ 360
  361 VIFKCCKLIP VMLGGVFIQG KRYNLADVSA AVCMSLGLIW FTLADSTIAP NFNLTGVMLI 420
  421 SLALCADAVI GNVQEKAMKL HNASNSEMVL YSYSIGFVYI LLGLSCTSGL GPALAFCSKN 480
  481 PVRTYGYAFL FSLTGYFGIS FVLALIKIFG ALLAVTVTTG RKAMTIVLSF LFFAKPFTFQ 540
  541 YIWSGLLVVL GIFLNVYSKN MDKIRLPSVY SVIKKAMDMK KSRTLAQTV

Type	Start	End	Confidence
Cytoplasmic	1	265	0.99
Transmembrane Helix	266	286	0.91
Non-Cytoplasmic	287	298	0.88
Transmembrane Helix	299	321	0.87
Cytoplasmic	322	332	0.86
Transmembrane Helix	333	353	0.90
Non-Cytoplasmic	354	382	0.56
Transmembrane Helix	383	404	0.86
Cytoplasmic	405	411	0.41
Transmembrane Helix	412	431	0.83
Non-Cytoplasmic	432	452	0.55
Transmembrane Helix	453	477	0.86
Cytoplasmic	478	484	0.56
Transmembrane Helix	485	511	0.79
Non-Cytoplasmic	512	538	0.56
Transmembrane Helix	539	557	0.93
Cytoplasmic	558	589	0.84