YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109503575, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	284	0.97
Transmembrane Helix	285	307	0.59
Cytoplasmic	308	349	0.44
Transmembrane Helix	350	372	0.87
Non-Cytoplasmic	373	379	0.72
Transmembrane Helix	380	401	0.83
Cytoplasmic	402	415	0.83
Transmembrane Helix	416	439	0.77
Non-Cytoplasmic	440	455	0.77
Transmembrane Helix	456	477	0.91
Cytoplasmic	478	497	0.78
Transmembrane Helix	498	515	0.90
Non-Cytoplasmic	516	523	0.56
Transmembrane Helix	524	540	0.72
Cytoplasmic	541	553	0.59
Transmembrane Helix	554	573	0.92
Non-Cytoplasmic	574	578	0.62
Transmembrane Helix	579	602	0.90
Cytoplasmic	603	608	0.70
Transmembrane Helix	609	629	0.68
Non-Cytoplasmic	630	640	0.51
Transmembrane Helix	641	664	0.88
Cytoplasmic	665	677	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALDPSLLC LLLPFFHLIA SAAEHEEVAK HAIKLHRGKG ATATQRRQWA LDSCRRLTGL  60
   61 LRQKNVVLNK LKNAIRAVEK DASLSGEEKL FQVHTFEIFQ KELNESENSV FQAIYGLQRA 120
  121 LQGDYRDVVN MKESSKQRLE ALREAAIKEE TEYVELLAAE KHQVEALKNM QHQNKSLSML 180
  181 DEILEDVRKA ADRLEEEIEE HAFDDNKSVK GVNFEAVLRV EEEEASSKQN LTKREVEGGL 240
  241 GLSMLIDSQN NQYILTKPRD STIPRADHHF IKDIVTIGML SLPCGWLCTT IGLPTMFGYI 300
  301 ICGVLLGPSG LNSIKSIVQV ETLGEFGVFF TLFLVGLEFS PEKLRKVWRI SLQGPCYMTL 360
  361 LMIAFGLWWG HLLRIRPTQS VFISTCLSLS STPLVSRFLV GSARGDKEGD LDYSTVLLGM 420
  421 LVMQDVQLGL FIAVMPTLIQ ASASTSSSVV MEVLRILFLI GQILFSLAAV FLLCLVMKTY 480
  481 LIGPYYRKLH LESKGNKEIL ILGVSAFTFL MLTVTELLDV SMELGCFLAG ALVSSQGHIV 540
  541 TEEIMGYIEP IRDFLAIIFF ASIGLHVFPT FVIYELTVLV FLTLSVVIMK FVLAVLVLSL 600
  601 ILPRSSQYIK WIVSAGLAQV SEFSFVLGSR ARRAGIISRE VYLLILSVTT LSLLLAPVLW 660
  661 KAAITKCVPR PERRSSL