YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109504423, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKMLAAVSR VLAGAAQKPI LNGNLALQAS RVLVASRNFA NDATFEIKKC DLHRLEEGPP  60
   61 VTTVLTREDG LKYYRMMQTV RRMELKAFQL YKQKIIRGFC HLCDGQEACC VGLEAGINPT 120
  121 DHLITAYRAH GFTFTRGLPV RAILAELTGR RGGCAKGKGG SMHMYAKNFY GGNGIVGAQV 180
  181 PLGAGIALAC KYNGKDEVCL TLYGDGAANQ GQIFEAYDMA ALWKLPCIFI CENNRYGMGT 240
  241 SVERAAASTD YYKRGDFIPG LRVDGMDILC VREATKFAAA YCRSGKGPIL MELQTYRYHG 300
  301 HSMSDPGVSY RTREEIQEVR SKSDPIMLLK DRMVNSNLAS VEELKEIDVE VRKEIEDAAQ 360
  361 FATADPEPPL EELGYHIYSS DPPFEVRGAN QWIKFKSVI

Type	Start	End	Confidence
Signal Peptide	1	16	0.92
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	399	0.99