YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109504647
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELFSVTTPP IPPFDRRRDK QCQAFFRKVT KSTLFQILMI TTVTANSFLL VLGTNYDIHF  60
   61 RMFRVFEFLM KVYVDPITYW KDGYNILDVV ILVIITIPYF LRKIKGNHFE YLHFADGIQS 120
  121 LRVLKLISYS RGIRTLIIAV GETVYTVASV LTLLFLLMFV FAILGFCLFG NADRGDLTNW 180
  181 GNLAAAFFTL FSLATVDGWT NLQEELDKRK FTVSRAFTIL FILLASFIFL NMFVGVMIMH 240
  241 TEDSIKKFER EMTLERNLAL MEEKQMILRR QQDEVNRLMN TQKVGGKSFV EMVEGFKRTL 300
  301 RHTDPMVLDE FCTSLSFIDI YLDTLDNQDV IVSKLQELYY EIANVLNLML EDMPPREKSS 360
  361 STLES

Type	Start	End	Confidence
Cytoplasmic	1	33	0.96
Transmembrane Helix	34	54	0.92
Non-Cytoplasmic	55	82	0.89
Transmembrane Helix	83	101	0.90
Cytoplasmic	102	142	0.85
Transmembrane Helix	143	168	0.84
Non-Cytoplasmic	169	179	0.74
Transmembrane Helix	180	200	0.89
Cytoplasmic	201	216	0.75
Transmembrane Helix	217	240	0.91
Non-Cytoplasmic	241	365	0.86