YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109504038
Protein type:	Globular with Signal Peptide
Type Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRRGLVGWI SRVVILLVLL CCAISVLYML ACTPKGDQEQ LGLPRANGPT GKDGYQAVLQ  60
   61 EREEQHRNYV NSLKRQIAQL KDELQARSEQ LRSGQDQASD ATSLRSGWDP EPKAQADILA 120
  121 FLRGQVDKAE VHAGVKLATE YAAVPFDSFT LQKVYQLETG LTRHPEEKPV RKDKRDELVE 180
  181 AIESALESLN SPSQDSNRRH QMGPLGELLL YSSNTFQEGI YRTERDKGTL YELTFKGDHK 240
  241 HEFQRLVLFR PFGPIMKVKK EKLNMANTLI NVIVPLARRV DKFRHFMQNF REMCIQQDGR 300
  301 VHLTVVYFGK EEMNEVKGIL ENTSKAANFR NFTFIQLNGE FSRGKGLDVG ARFWKGSNVV 360
  361 LFFCDVDIYF TSEFLNTCRL NTQPGKKVFY PVLFSQYNPG IIYGHHDAVP ALEQQLVIKK 420
  421 ETGFWRDFGF GMTCQYRSDF INIGGFDLDI KGWGGEDVHL YRKYLHSNLI VIRTPVRGLF 480
  481 HLWHEKHCMD ELTPEQYRMC MQSKAMNEAS HGQLGMLVFR HEIEAHLRKQ KLKASSKKT

Type	Start	End	Confidence
Signal Peptide	1	31	0.64
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	539	0.99