YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109503222, gi...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLGVQLVV TLFTATLMHR LAPHCSFARW LLCNGSLFRY IHPSEEELRA LAGKPRPRGR  60
   61 KERWANSLHD EKPLSVPRDA HFQLETCPLT AVDALVLRFF LEYQWFVDFA VYSVGVYLFT 120
  121 EAYYFVLGPV QETNIAVFWC LLTLAFSLKV FLMVTRLYFS SKEGGERSVC LSFAFLFLLL 180
  181 AMLVQVVREE TLELGLEPGL ASMTQHLEPV LKKQDWDWTL PVIKLSIRLG LAVLGSLLGA 240
  241 FLIFPGLRLA QTHQDALTLS ADRPLLQLLL HTSFLSPLCT LWLWTKPVAR DFLYQAPMRN 300
  301 MTFSVPSEEV FDSLRLWVLV VLCLLRLVVT RPHLQAYLCL AKARVEQLRK EAGRIEAREV 360
  361 QQRVVRVYCY VTVVSLQYLT PLILTLHCTL LLKTLGGYSW ALSPTPHPLA PSQPSETLIS 420
  421 VDPADEAQQT AAQVAGILGG LLTPLFLRGV LAYIIWWTAA CQLLSSLFGL YFHQHLTAS

Type	Start	End	Confidence
Cytoplasmic	1	104	0.81
Transmembrane Helix	105	127	0.80
Non-Cytoplasmic	128	134	0.91
Transmembrane Helix	135	155	0.94
Cytoplasmic	156	167	0.79
Transmembrane Helix	168	187	0.93
Non-Cytoplasmic	188	224	0.96
Transmembrane Helix	225	247	0.91
Cytoplasmic	248	264	0.91
Transmembrane Helix	265	285	0.89
Non-Cytoplasmic	286	312	0.88
Transmembrane Helix	313	330	0.88
Cytoplasmic	331	367	0.92
Transmembrane Helix	368	391	0.64
Non-Cytoplasmic	392	449	0.61
Transmembrane Helix	450	473	0.81
Cytoplasmic	474	479	0.44