YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109503911
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.87
Transmembrane Helix	16	35	0.83
Non-Cytoplasmic	36	41	0.63
Transmembrane Helix	42	63	0.86
Cytoplasmic	64	81	0.83
Transmembrane Helix	82	101	0.80
Non-Cytoplasmic	102	108	0.66
Transmembrane Helix	109	127	0.83
Cytoplasmic	128	135	0.81
Transmembrane Helix	136	153	0.95
Non-Cytoplasmic	154	158	0.79
Transmembrane Helix	159	179	0.91
Cytoplasmic	180	190	0.90
Transmembrane Helix	191	212	0.89
Non-Cytoplasmic	213	230	0.85
Transmembrane Helix	231	254	0.84
Cytoplasmic	255	277	0.62
Transmembrane Helix	278	303	0.62
Non-Cytoplasmic	304	380	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGDDAQGQ RPMKALCLLW YALSAGGNVV NKVILSAFPL PVTVSLCHIL ALCAGLPPLL  60
   61 RAWRVPHPAS GPLLPPRFYP RYVLPLAFGK YFASVSAHVS IWKVPVSYAH TVKATMPIWV 120
  121 VLLSRIIMKE KQSTKVYLSL VPIISGVLLA TVTELSFDVW GLVSALAATL CFSLQNIFSK 180
  181 KVLRDSRIHH LRLLNILGCH AVFFMIPTWV LVDLSTFLVS SDLAYVSQWP WTLLLLVVSG 240
  241 FCNFAQNVIA FSILNLISPL SYSVANATKR IMVIAVSLIM LRNPVTSTNV LGMMTAILGV 300
  301 FLYNKTKYDA NQQARRHLLP VSTSDLSNRE HLRSPMEKPH NGALFPQQGD FQYRNILLTD 360
  361 HFQYSRQGHP NSYALSRHDV