YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109503354
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRDATDSSS ARRGPTSAAD ASRATRASAD GQRTAVRPGG GWRGPAAVAA LAVLALCCLV  60
   61 PGWGPAAGTG PGAVLLRLSL YLSCAAAALL LGTLVALVCW SPRAQPPDFA SSWSRLAAAV 120
  121 RCPLRSPVYG NPQETAQGRR VVISHNMDRA LKDVFDYSYR DYILSWYGNL SRDDGQLYHL 180
  181 LLDDFWDIAK QIRYRLSHVD VVKVVCNDIV KALLTHFCDL KAATARHEEQ PRPFVLHACL 240
  241 KDSHDEVRFL QTCSQVLVFC LLPSKDIQSL SLRTMLAEIL TTKVLKPVVE LLSNPDYINQ 300
  301 MLLAQLEYRE QMSGHHKRAY TYAPSYEEFI KLINSNSDVE FLKQLRYQIV VEIIQATTIS 360
  361 SFPQLKRHKG KESAAMKTDL LRARNMKRYI NQLTVAKKQC EKRIRILGGP AYDQQEDGVS 420
  421 DEGEGPQSQK ILQFEDIMTN PFYRERFGTY MERIDKRALV GFWESVEHLK NANKNEIPQL 480
  481 VSEMYQNFFV ESKEIPVEKS LYKEIQQCLV GNKGIEVFSK IQGDVYDVLR DRYYPSFLVS 540
  541 DLYEKLIHEE EEETPDSQLA SGKDELGSGG EAGEEVVEGT SGVSDPASFA VIKLRELSEK 600
  601 LEYKRQALSS IQNAPKPDKK IISKLKDEIL VIEKECTDLQ LHMARTDWWC EHLGLWKASI 660
  661 TSAEVTEENG EQMPCYFVRV NLQEVGGVET KNWTVPRRLS EFQNLHRKLS ECVPSLKKVQ 720
  721 LPSLSKLPFK SIDHKFLEKS KNQLNKFLQN LLSDERLFQS EALYAFLSPS PDYLKVIDVQ 780
  781 GKKTSFSLSS FLEKLPRDFF SHQEEEIEED SDLSDYGDDV DGKKDALAEP CFMLIGEIFE 840
  841 LRGMFKWVRR TLIALVQVTF GRTINKQIRD TVNWIFSEQM VVYYISAFRD AFWPNGKLAP 900
  901 PTRIRSEAQS QETKQRAQQK LLENIPDTLQ SLVGQQNARH GIIKIFKALQ ETRANKHLLY 960
  961 VLMELLLTEL CPELRAHLDQ LKAGQV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle