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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109503103
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.51
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEGAAGASP PGAASAAAAS AEEGTAAAAA AAAAAAAAGG GPDGGGEGAA EPPRELRCSD  60
   61 CIVWNRQQTW LCVVPLFIGF IGLGLSLMLL KWIVVGSVKE YVPTDLVDSK GMGQDPFFLS 120
  121 KPSSFPKAME TTTTTTSTTS PATPSTGGAA SSRTPNRIST RLTTITRAPT RFPGHRVPIR 180
  181 ASPRSTTARN TAAPPTVLST TSPFFSSSTP GSRPPMPGAP STQAMPSWPT AAYATSSYLH 240
  241 DSTPSWTLSP FQDAAAASSS SPSSTSSTTT TTPETSTSPK FHTTTYSTER SEHFKPCRDK 300
  301 DLAYCLNDGE CFVIETLTGS HKHCRCKEGY QGVRCDQFLP KTDSILSDPT DHLGIEFMES 360
  361 EDVYQRQVLS ISCIIFGIVI VGMFCAAFYF KSKKQAKQIQ EHLKESQNGK NYSLKASSTM 420
  421 TKSESLMKSH VQLQNYSKAD RHPVTALEKI MESSFTAPQL FPEVTSDRGS QPIKHHSPGQ 480
  481 RSGMLHRNTF RRTPPSPRSR LGGIVGPAYQ QLEESRIPDQ DTIPCQGIEV RKTISHLPIQ 540
  541 LWCVERPLDL KYASNGLRTQ QNASINMQLP SRETNPYFNS LDQKDLVGYL SPRANSVPII 600
  601 PSVGLEETCM QMPGISDVKS IKWCKNSYSA DIVNASIPVS DCLLEEQQEV KILLETVQEQ 660
  661 IRILTDARRS EDYELASMET EDSASENTAF LPLSPTAKSE REAQFVLRNE IQRDSVLTK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle