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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109502903
Protein type: Globular with Signal Peptide
Type Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSEAGRLPL RATPAVAAAA AAAAAAAAAA APPPPHTPRV AGLDEWPQQR RGRRGEEEEK  60
   61 AAAAEKVAVF VVSLLRAPEA AATAVVVGRV CEGARVPARP ARGDEAAAAR MMMCAATASP 120
  121 AAASSGPGGD GFFAAATISS SPAPGALFMP VPDGSVAASG LGLGLPATDS RGQYQLLLSG 180
  181 RALADRYRRI YTTALSDRDQ AGSSTGYPAS RNKKILNKKK LKRKQKSKSK VKTRSKSENL 240
  241 ENTVIIPDIK LHSNPSAFNI YCNVRHCVLE WQKKEASLAA ASRNSVQSGE SDSDEEEESR 300
  301 ELPIKLPKII EVGLCEVFEL IKETRFSHPS LCLRSLQALL NVLQGQQPEG LQSEPPEVLE 360
  361 SLFQLLLEIT VRSTGVNDST GQSLTALSCA CLFSLVASWG ETGRTLQAIS AILTNNGSHA 420
  421 CQTIQVPTIL NSLQRSVQAV LVGKIQVQDW FSNGIKKAAL MHKWPLKEIS VDEDDQCLLQ 480
  481 NDGFFLYLLC KDGLYKIGSG YSGTVRGHIY NSTSRIRNRK EKKSWLGYAQ GYLLYRDVNN 540
  541 HSMTAIRISP ETLEQDGTVM LPDCHTEGQN ILFTDGEYIN QIAASRDDGF VVRIFATSTE 600
  601 PVLQQELQLK LARKCLHACG ISLFDLEKDL HIISTGFDEE SAILGAGREF ALMKTANGKI 660
  661 YYTGKYQSLG IKQGGPSAGK WVELPITKSP KIVHFSVGHD GSHALLVAED GSVFFTGSAS 720
  721 KGEDGESAKS RRQSKPYKPK KIIKMEGKIV VCTACNNGSS SVISKDGELY MFGKDAIYSD 780
  781 SSSLVSDLKG HFVTQVAMGK AHTCVLMKNG EVWTFGVNNK GQCGRDTGAM NQGGKGFGVE 840
  841 NMATAMDEDL EEELDEKDEK SMMCPPGMHK WKLEQCMVCT VCGDCTGYGA SCVSSGRPDR 900
  901 VPGGICGCGS GESGCAVCGC CKACARELDG QEARQRGILD AVKEMIPLDL LLAVPVPGVN 960
  961 IEEHLQLRQE EKRQRVIRRH RLEDGRGPLV FAGPIFMNHR EQALARLRSH PAQLKHKRDK1020
 1021 HKDASGERGE KDASKVTTYP PGSVRFDCEV RAVQVSCGFH HSVVLMENGD VYTFGYGQHG1080
 1081 QLGHGDVNSR GCPTLVQALP GPSTQVTAGS NHTAVLVMDG QVFTFGSFSK GQLGRPILDV1140
 1141 PYWNAKPAPM PNIGSKYGRK ATWIGASGDQ TFLRIDEALI NSHVLATSEI FASKHIIGLV1200
 1201 PASISEPPPF KCLLINKVDG SCKTFNDSEQ EDLQGFGVCL DPVYDVLWRF RPSTRELWCY1260
 1261 NAVVADARLP SATDMQSSCC ILSPELALPT GSRALTTRSH AALHILGCLD TLAAMQDLKM1320
 1321 GIASIEEETQ AVMKVYSKED YSIVNRFESH GGGWGYSAHS VEAIRFSADT DILLGGLGLF1380
 1381 GGRGEYTAKI KLFELGPDGG DHETDGDLLA ETDVLAYDCA AREKYAMMFD EPVLLQAGWW1440
 1441 YVAWARVSGP SSDCGSHGQA SITTDDGVIF QFKSSKKSNN GTDVNAGQIP QLLYRLPTCD1500
 1501 GSTSKGKQQT SEPVHILKRS FARTVSVECF ESLLSILHWS WTTLVLGVEE LRGLKGFQFT1560
 1561 ATLLDLERLR FVGTCCLRLL RVYTCEIYPV SAVGKAVVEE TSKLAECIGK TRTLLRKILS1620
 1621 EGVDHCMVKL DNDPQGYLSQ PLSLLESVLQ ECHNTFTACF HSFYPTPALQ WACLCDLLNC1680
 1681 LDQEANFKTS SSRLLAAVMS ALCHTSVKLT SLFPIAYDGE VLLRSIVKQV STENESTLVH1740
 1741 RFPLLVGHME KLSQSEENIS GMTSFREVLE KMLVIVVLPV RNSLRRESEL FSSHLVSNTC1800
 1801 GLLASIVSEL TASALGSEVD GLNSLHSVKA SANRFTKTSQ GRSWNTGNGS PDAICFAVDK1860
 1861 PGIVVVGFSV YGGGGIHEYE LEVLVDDSEH SGDSTHSHRW TSLELVKGTY TTDDSPSDIA1920
 1921 EIRLDKVVPL KENVKYAVRL RNYGSRTANG DGGMTTVQCP DGVTFTFSTC SLSSNGTNQT1980
 1981 RGQIPQILYY RSEFDGDLQS QLVSKANEED KNCSRALSVV STVVRAAKDL LHRALAVDAD2040
 2041 DIPELLSSSS LFSMLLPLII AYIGPVAAAI PKVAVEVFGL VQQLLPSVAV LNQKYAPPAF2100
 2101 NPNQSTDSTT GNQPEQGLSA CTTSNHYAVI ESEHPYKPAC VMHYKVTFPE CVRWMTIEFD2160
 2161 PQCGTAQSED VLRLLTPVRT IQNAGYGAKV TSAHENLNSW IELKKYSGSS GWPTMVLVLP2220
 2221 GNEALFSLET ASDYVKDDKA SFYGFKCFAI GYEFSPGPDE GVIQLEKELA NLGGVCAAAL2280
 2281 MKKDLALPIG NELEEDLEIL EEAALQVCKT HSGILGKGLA LSHSPTILEA LEGNLPLQIQ2340
 2341 SNEQSFLDDF IACVPGSSGG RLARWLQPDS YADPQKTSLI LNKDDIRCGW PTTITVQTKD2400
 2401 QYGDVVHVPN MKVEVKAVPV SQKKTSLQQE QVKKSQRVPG SPAAAAAASC TTDMTFGGLA2460
 2461 SPKLDVSYEP MIVKEARYIA ITMMKVYENY SFEELRFASP TPKRPSENML IRVNNDGTYC2520
 2521 ANWTPGAIGL YTVHVTIDGI EIDAGLEVKV KDPPKGMIPP GTQLVKPKAD PQPNKIRKFV2580
 2581 AKDSAGLRIR SHPSLQSEQI GIVKVNGTIT FIDEIHNDDG VWLRLNEETI RKYVPNMNGY2640
 2641 TEAWCLSFNQ HLGKSLLVPV DNIFNASQGV RDLDVLSWTS KAFFPQEPKT TTDDFFKDVN2700
 2701 TCCPQEAAVR ERDHPFLRGG PGMYKVVKTG PSGHNIRSCP NLRGIPIGML VLGNKVKAVG2760
 2761 EVTSAEGTWV QLDKNSMVEF CESDEGEAWS LARDRGGNQY LRHEDEQVLL DQNSQTPPPS2820
 2821 PFSVQAFSKG ASCSAQGFDY GLGNNKGDQL SAILNSIQSR PNLPAPSIFD QAAKPPSSLV2880
 2881 HSPFVFGQPL SFQQRQLQSD RGTVSTSSRP VSTSAKSELP SKNSRSVKPD GRVSRTTADQ2940
 2941 KKPRGTEGLS ASESLMLKSD AAKLRSDSHS RSLSPNHNTL QTLKSDGRVS SSFRAESPGP3000
 3001 GSRSSSPKPK TLPTPRSSPS GASSPRSSSP QDKNLPQKST APAKTKLDPP RERSKSDSYT3060
 3061 LDPDTLRKKK MPLTEPLRGR STSPKPKPVP KDPKGSPGSE NRAPSPHVVQ ENLHSEVVEV3120
 3121 CTSSTLKTNG VTDSTCDDSN DFKSVDEGSN KVHFSIGKAP LKDEQEMRAS PKISRKCANR3180
 3181 HTRPKKEKSN FLFKGDGAKS LEPAKQAMSP SVAECARAVF ASFLWHEGIV HDAMACSSFL3240
 3241 KFNPELSKEH APIRSSLNSQ PPTEEKEIKL KNRHSLEISS ALNMFNISPH GPDISKMGSI3300
 3301 NKNKVLSMLK EPPLHEKCED GKSEATFEMS MHHSVKSRSP LPLTLQHLVA FWEDISLATI3360
 3361 KAASQNMIFP SPGSCAVLKK KECEKENKKT KKEKKKKEKT EIRPRGNLFG EMAQLAVGGP3420
 3421 EKDTICELCG ESHPYPVTYH MRQAHPGCGR YAGGQGYNSI GHFCGGWAGN CGDGGMGGST3480
 3481 WYLVCDRCRE KYLREKQAAA REKVKQSRRK PMQVKTPRAL PTMEAHQVIK ANALFLLSLS3540
 3541 SAAEPSILCY HPAKPFQSQL PIVKEGVSEA LPVKMPCLYL QTLARHHHEN FVGYQDDNLF3600
 3601 QDEMRYLRST SVPAPYISVT PDASPNVFEE PESNMKSMPP SLETSPITDT DLAKRTVFQR3660
 3661 SYSVVASEYD KQHSILPARV KAIPRRRVNS GDTVGSSLLR HPSPELSRLI SAHSSLSKGE3720
 3721 RNFQWPVLAF VIQHHDLEGL EIAMKQALRK SACRVFAMEA FNWLLCNVIQ TTSLHDILWH3780
 3781 FVAALTPSPV EAEEDEDEDN KSSKENAEQE KDTRVCEHPL SDIVIAGEAA HPLPHTFHRL3840
 3841 LQTISDLMMS LPSGSSLQQM ALRCWSLKFK QSDHQFLHQS NVFHHINNIL SKSDDGDSEE3900
 3901 SFSISIQSGF EAMNQELCIV MCLKDLTSIV DIKTSSRPAM IGSLTDGSTE TFWESGDEDK3960
 3961 NKTKTITINC VKGINARYVS VHVDNSRDLG NKVTSMTFLT GKAVEDLCRI KQVDLDSRHI4020
 4021 GWVTSELPGG DNHIIKIELK GPENTLRVRQ VKVLGWKDGE STKIAGQISA SVAQQRSCEA4080
 4081 ETLRVFRLIT SQVFGKLISG DAEPTPEQEE KALLSSPEGE EKATSDADLK EHMVGIIFSR4140
 4141 SKLTNLQKQV CAHIVQAIRM EATRVREEWE HAISSKENAN SQPSDEDASS DAYCFELLSM4200
 4201 VLALSGSNVG RQYLAQQLTL LQDLCSLLHT ASPRVQRQVT SLLRRVLPEV TPNRLASIIG4260
 4261 VKSLPPADIS DIIHSTEKGD WNKLGILDMF LGCIAKALTV QLKAKGTTIT GTAGTTVGKG4320
 4321 VTTVTLPMIF NSSYLRRGES HWWMKGSTPT QISEIIIKLI KDMAAGHLSE AWSRVTKNAI4380
 4381 AETIIALTKM EEEFRSPVRC IATTRLWLAL ASLCVLDQDH VDRLSSGRWM GKDGQQKQMP4440
 4441 MCDNHDDGET AAIILCNICG NLCTDCDRFL HLHRRTKTHQ RQVFKEEEEA IKVDLHEGCG4500
 4501 RTKLFWLMAL ADSKTMKAMV EFREHTGKPT TSSSEACRFC GSRSGTELSA VGSVCSDADC4560
 4561 QEYAKIACSK THPCGHPCGG VRNEEHCLPC LHGCDKNATT LKQDADDMCM ICFTEALSAA4620
 4621 PAIQLDCSHV FHLQCCRRVL ENRWLGPRIT FGFISCPICK NKINHIVLKD LLDPIKELYE4680
 4681 DVRRKALMRL EYEGLHKSEA ITTPGVRFYN DPAGYAMNRY AYYVCYKCRK AYFGGEARCD4740
 4741 AEAGQGDDYD PRELICGACS DVSRAQMCPK HGTDFLEYKC RYCCSVAVFF CFGTTHFCNA4800
 4801 CHDDFQRMTS IPKEELPHCP AGPKGKQLEG TECPLHVVHP PTGEEFALGC GVCRNAHTF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle