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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109502694
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKVDVEADE HKSSGSAVTA GKHLSPTPVS AAAAAGAWAH LQPSEGTSRS LAEETPGDPP  60
   61 SFASGRRDSE SWRAFRCIDA LLMMAEHPPL LDTAQILSSD ISLLSAPIVS ADGTQQVILV 120
  121 QVNPGEAFTI RREDGQFQCI TGPAQVPMMS PNGSVPPIYV PPGYAPQVIE DNGVRRVVVV 180
  181 PQSPEFHPGG HTVIHRSPHP PLPGFIPVPT MMPPPPRHMY SPVTGAGDMA TQYMPQYQSS 240
  241 QVYADVDAHS THGRSNFRDE RSTKTYERLQ KKLKDRQGTQ KDKMSSPPPS PQKCPSPISE 300
  301 HNGLIKGQNT SGVNTGSARN RSGRGRGCTQ VDQEIEEKDE ETKAFEAFLS NIVRPVASDI 360
  361 QARTVLLTWS PPSSFVNGEV TETTVPEFFN YEILVSSTGK EGKYRSVYVG EETSVTLNDL 420
  421 KPATDYHAKV QAESNSIKGI PSEAESFTTL SCEPDTPNAP RIANRTKNSL TLQWKPSSIT 480
  481 GNQEKASVXS RWSPGKGSGE FCQCYMGSQK QFKITKLSPA MGCKFRLSAK NDYGVSDFSE 540
  541 EVLYYTSGCA PSVPASPVLT KAGVTWLSLQ WTKPSGTPSD EGISYILEME EETSGYGFKP 600
  601 KYDGEDLAYT VKNLRRSTKY KFKVIAYNSE GKSSPSEVVE FSTCPDKPGV PAKPSVKGKV 660
  661 HSHGFKITWD PPRDNGGAPI NKYVVEMAEG SNGSKWDMIY SGATREHLCD RLTPGCYYRL 720
  721 RVYCISDGGQ SAVSESLLVQ TPAVPPGPCL PPRLQGRPKA KEIQLRWGPP QVDGGSPISC 780
  781 YAVEMTPADK DEPRDVYQGS EVECTVSSLL PGKTYSFRLR AANRIGFGPF SEKYDITTAP 840
  841 GPPDQCRPPQ VTCRSATCAQ VNWEIPLSNG TDITEYRLEW GGVEGSMQIC YCGPGLSCEL 900
  901 KGLSPATTYY CRVQALSVVG AGPFSEVVAC VTPPSVPAIV TCLQEIRDDD IEYPHYSPST 960
  961 CLAISWEEPY DHGSEILAYS IDLGDKQPLT VGKVTSYVIN SLQPDTTYRI RIQALNSLGA1020
 1021 GPFSHTIKLK TKPLPPDPPR LECVAFNHQN LKLKWGEGTP KTLATDAVQY HLQMEDKNGR1080
 1081 FVSLYRGPCH TYKVQRLSES TSYKFCIQAC NEAGEGPLSQ EYVFTTPKSV PAALKAPKIE1140
 1141 KINDHICEIT WEYLQPMKGD PVIYNLQVMV GKDSEFKQIY RGPDTSFRYS SLQLNCEYRF1200
 1201 RVCAIRQCQD PAGHQDLVGP YSTTVFFISQ RTEPLASSNR DTVDSARTRR TLSDEQCAAV1260
 1261 ILVLFAFFSI LIAFIIQYFV IK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle