YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109502345
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKAVLINQT SVTSFRLTGL SANPKVQMFV FFIFLVFYVM TLVGNILIVI TIIFDHRLHT  60
   61 PMYFFLSNLS FIDVCHSTVT VPKMLSDTLS DEKVISFDAC VVQIFFLHLF ACTEIFLLTV 120
  121 MAYDRYVAIC KPLRYMTIMN WKVCTVLGVA MWTAGTVHSI SFTSLTIKLP YCGPDEIDNF 180
  181 FCDVPQVIEL ACTDTRITEI LVVSNSGMIS MVCFVIIVVS YAVILVSLRQ QISDGKRKAL 240
  241 STCAAHLTVV TLFLGHCIFI YSRPSISLPE DKIVSAFFTA VTPLSMTYWK SDIHCDSVTQ 300
  301 SHTAVHLGSP KPSAISEDAI NKSLDQNNHL YF

Type	Start	End	Confidence
Cytoplasmic	1	28	0.70
Transmembrane Helix	29	54	0.90
Non-Cytoplasmic	55	103	0.78
Transmembrane Helix	104	123	0.91
Cytoplasmic	124	137	0.86
Transmembrane Helix	138	160	0.85
Non-Cytoplasmic	161	206	0.95
Transmembrane Helix	207	228	0.92
Cytoplasmic	229	238	0.93
Transmembrane Helix	239	260	0.88
Non-Cytoplasmic	261	332	0.87