YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109502215
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFPGSRGRQ PNSFHKAFLE HTHVHIHTHI HIHIHVHIHT HTYIHTHSHI HTHIHTHIHI  60
   61 HIHSHIHIHI HIHIHTHIHT HVHIHIHIHS HIHIHIHIHI HIHIHTHIHT HSHIHTHSHI 120
  121 HSHIHTHSLI RVVAFIFTVV TMWIFLRSYT NFNRKTIRLP RWLGEWGSKE LNTPKFKCGL 180
  181 SKSCLNNFFA FKISSGAANV VGPSMCFEDE IIMSPVRNNV GRGLNIALVN GTTGRVIRKA 240
  241 SFDMYSGEPQ PLLDFLTEIP DSTLVLVASY DDPGTKMNDK IKTLFTNLGS SYAKQLGFRD 300
  301 SWVFVGAKDL RSKSPYEQFL KNNPETNKYE GWPELLELEG CVPKKVM

Type	Start	End	Confidence
Cytoplasmic	1	126	0.69
Transmembrane Helix	127	146	0.90
Non-Cytoplasmic	147	347	0.55