YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109499619, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPASDSRWR VTGLQGSEPT QTLAHSGFLS EGWRGRGKAW PSQGVSPTPV PERKRGLRRA  60
   61 KMAAAAAAAA ATEQQGSNGP VKKSMREKAV ERRNVNKEHN SNFKAGYIPI DEDRLHKTGL 120
  121 RGRKGNLAIC VIVLLFILAV INLLITLVIW AVIRIGPNGC DSLEFHESGL LRFKQVSDMG 180
  181 IIHPLYKSTV GGRRNENLVI TGNNQPIVFQ QGTTKLSVEK NKTSITSDIG MQFFDPRTQN 240
  241 ILFSTDYETH EFHLPSGVKS LNVQKASTER ITSNATSDLN IKVDGRAIVR GNEGVFIMGK 300
  301 TIEFHMRGDV ELKAENSIIL NGTVMVSPTR LPSSSGGDQS GSGDWVRYKL CMCADGTLFK 360
  361 VQVTSHNMGC QVSDNPCGNT H

Type	Start	End	Confidence
Cytoplasmic	1	126	0.98
Transmembrane Helix	127	153	0.88
Non-Cytoplasmic	154	381	0.98