YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157822095, gi...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCGSCAGLL RSLRTLQLRA PGSLPAWSSA RLPTLPVWAA ASVSAASPGG WYEALAASAP  60
   61 VHAAEEMLLS AQETTGLPWW GNILLSTVVL RGAVTLPLAA YQHYILAKVE NLQPEIKDIA 120
  121 KRLNQEVAVC ARQFGWSKRV ARLTYLKNIR RLVSELYVRD NCHPFKATVL VWVQLPMWVF 180
  181 ISVALRNLST GATHSDGISV QDQLAAGGTL WFPDLTAVDS TWILPVSVGV VNLLIVEIFA 240
  241 LQKIGKSRFQ MYVTNFVRAV SVLMVPVAAT VPSALVLYWL CSSLMGLSQN LLLRSPGFRQ 300
  301 LCRIPPSRSD SETPYRDLSA AFCAKFLSRK R

Type	Start	End	Confidence
Cytoplasmic	1	33	0.75
Transmembrane Helix	34	52	0.63
Non-Cytoplasmic	53	78	0.78
Transmembrane Helix	79	99	0.70
Cytoplasmic	100	167	0.85
Transmembrane Helix	168	188	0.76
Non-Cytoplasmic	189	220	0.90
Transmembrane Helix	221	241	0.93
Cytoplasmic	242	255	0.84
Transmembrane Helix	256	281	0.83
Non-Cytoplasmic	282	331	0.71