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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NID2_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWDPTAGRL APPSPLSLLL VLVLLSRVGA LRPEELFPYG ESWGDRLLPE GDDESSAAVK  60
   61 LAVPLRFYDA QFSNLYVGTN GIISTQDFPR ETQYVDDDFP TDFPAIAPFL ADIDTSHSRG 120
  121 RILYREDTSQ AVLSLAARYV RTGFPLTGSS FTPTHAFLAT WEHVGAYEEV RRGAAPSGEL 180
  181 NTFQAVLASD ESDTYALFLY PANGLQFFGT RPKESYNVQL QLPARVGFCR GEADDLKREA 240
  241 LYFSLTNTEQ SVKNLYQLSN LGIPGAWAFH IGSRLALDNV RPATVGGDHS TARSSALEHS 300
  301 FNHAAALESY TEDSFDYYNE NEEDVEYPPI EPGEALEGHS RIDVSFNSEV NPTSPDSDHA 360
  361 SPLPHPAPGN WPSYRETESA SLDPQTKQGP PVGEVEVLDF KDPAELLDQT GTRTPAPPGA 420
  421 DAAFLTPGRE DLGNRDTQSY PEARPVPSEP DVPVAPLERE ILPNYPESGH VPPLSGGRYV 480
  481 VGLEDHVSSK DQVFTYNGAN RETCEHSHGQ CSRHAFCTDY TTGFCCHCQS RFYGNGRHCV 540
  541 PEGAPHRVNG KVSGHLQVGH MPVHFTDVDL HAYIVSNDGR AYTAISQIPQ PAAQALLPVL 600
  601 PIGGLFGWLF ALEKPGSENG FSLTGATFVH DVEVTFHPGE ERVRITQTAE GLDPENYLSL 660
  661 NTNIEGQVPF IPANFTAHIA PYQEFYHHRD SVVTSSSSRS FSLISGSINQ TRSYRIDQNI 720
  721 TYKACSHAPR HLAVPATQQL TVDRAFALYS EEEGVLRFAV TNQIGPVEVD SAPTAVNPCY 780
  781 DGSHTCDTTA RCHPGTGVDY TCECTPGFQG DGRSCVDVNE CATGFHRCGP NSVCVNLVGS 840
  841 YRCECRSGYE FADDRHTCVL IAPPPNPCLD GSHTCAPEGQ ARCIHHGGSS FSCACLPGFV 900
  901 GTGHQCSDVD ECAENRCHGA AICYNTPGSF SCRCQPGYHG DGFHCASDTV PEDSISGLKP 960
  961 CEYQQRYAQA QHAHAGSRIH IPQCDDQGNF VPLQCHGSTG FCWCVDQNGH EVPGTQTPPG1020
 1021 STPPHCGPPP EPTQRPRTVC ERWRESLLEH YGGTPRDDQY VPQCDDLGHF IPLQCHGKSD1080
 1081 FCWCVDKDGR ELPGTRSQPG TMPACIPTVA PPVVRPTPRP DVTPPAVGTF LLYAQGQQIG1140
 1141 HLPLNGSRLQ KDAARTLLSL HGSIVVGIDY DCRERMVYWT DVAGRTISRA SLEAGAEPET1200
 1201 IITSGLISPE GLAIDHFRRT MYWTDSGLDK IERAGLDGSE RKVLFHTDLV NPRAITVDPI1260
 1261 RGNLYWTDWN REAPKIETSS LDGENRRILI NKDIGLPNGL TFDPFSKLLC WADAGTKKLE1320
 1321 CTLPDGTGRR VIQNHLNYPF SVVSYADHFY HTDWRRDGVI SVSKDSGQLT DEYLPEQRSH1380
 1381 LYGITAVYPY CPTGRK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle