YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109500983
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.99
Transmembrane Helix	12	36	0.83
Non-Cytoplasmic	37	46	0.82
Transmembrane Helix	47	67	0.90
Cytoplasmic	68	77	0.80
Transmembrane Helix	78	97	0.96
Non-Cytoplasmic	98	109	0.71
Transmembrane Helix	110	130	0.76
Cytoplasmic	131	134	0.72
Transmembrane Helix	135	156	0.91
Non-Cytoplasmic	157	165	0.69
Transmembrane Helix	166	187	0.89
Cytoplasmic	188	560	0.90
Transmembrane Helix	561	583	0.92
Non-Cytoplasmic	584	588	0.76
Transmembrane Helix	589	610	0.94
Cytoplasmic	611	626	0.79
Transmembrane Helix	627	652	0.84
Non-Cytoplasmic	653	679	0.79
Transmembrane Helix	680	700	0.89
Cytoplasmic	701	706	0.70
Transmembrane Helix	707	726	0.74
Non-Cytoplasmic	727	736	0.61
Transmembrane Helix	737	755	0.76
Cytoplasmic	756	1073	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XFRGYTLRLE QAATLKALAV LSLLAGALAL AELLGAPGPA PGLAKGSHPV HCILFLALFV  60
   61 VTNVRSLQVS QLQQVGQLAL FFSLTFALLC CPFALGGPAR SSAGGAMGSA VAEQGVWQLL 120
  121 LVTFVSYALL PVRSLLAIGF GLVVAASHLL VTAALVPAKR PRLWRTLGAN ALLFFGVNMY 180
  181 GVFVRILTER SQRKAFLQAR NCIEDRLRLE DENEKQERLL MSLLPRNVAM EMKEDFLKPP 240
  241 ERIFHKIYIQ RHDNVSILFA DIVGFTGLAS QCTAQELVKL LNELFGKFDE LATENHCRRI 300
  301 KILGDCYYCV SGLTQPKTDH AHCCVEMGLD MIDTITSVAE ATEVDLNMRV GLHTGRVLCG 360
  361 VLGLRKWQYD VWSNDVTLAN VMEAAGLPGK VHITKTTLAC LNGDYEVEPG HGHERNTFLR 420
  421 THNIETFFIV PSHRRKIFPG LILSDIKPAK RMKFKTVCYL LVQLMHCRKM FKAEIPFSNV 480
  481 MTCEDDDKRR ALRTASEKLR NRSSFSTNVV YTTPGTRVNR YISRLLEARQ TELEMADLNF 540
  541 FTLKYKHVER EQKYHQLQDE YFTSAVVLAL ILATLFGLIY LLVIPQSVAV LLLLVFSICF 600
  601 LVACTLYLHI TRVQCFPGCL TIQIRTALCV FIVVLIYSVA QGCVVSCLPW AWSSHSNSSL 660
  661 VVLAAGGRRT VLPALPCESA HHGLLCCLVG TLPLAIFLRV SSLPKMILLS GLTTSYILVL 720
  721 ELSGYTKVGG GALSGRSYEP IMAILLFSCT LALHARQVDV RLRLDYLWAA QAEEERDDME 780
  781 RVKLDNKRIL FNLLPAHVAQ HFLMSNPRNM DLYYQSYSQV GVMFASIPNF NDFYIELDGN 840
  841 NMGVECLRLL NEIIADFDEL MDKDFYKDLE KIKTIGSTYM AAVGLAPTAG TRAKKSISSH 900
  901 LSTLADFAID MFDVLDEINY QSYNDFVLRV GINVGPVVAG VIGARRPQYD IWGNTVNVAS 960
  961 RMDSTGVQGR IQVTEEVHRL LNRCSYQFVC RGKVSVKGKG EMLTYFLEGR TDGSSSHSRS1020
 1021 LRLERRMFPY GRGGGGQARR PPLCPAAGPP IKPGLSPAPT SQYLSSTAAG KEA