YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109500913, gi...
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAGGRGCV RSLREGVLWR SSPCHCDYTA TRHFLGALQK LPLQACNTGV RKVHTAPLRT  60
   61 LFLLRPVPIL LAAGGGYAGY RQYEKYRERQ LEKLGLEIPP KLASHWEVEL PSWLRRPVYS 120
  121 LYIWTFGVNM TEAAVEDLQH YRNLSEFFRR KLKPQARPVC GLHSVISPSD GKILTFGQVK 180
  181 NSEVEQVKGV TYSLESFLGP RACTEDLPFP PASSCDSFRN QLVTREGNEL YHCVIYLAPG 240
  241 DYHCFHSPTD WTVSHRRHFP GSLMSVNPGM ARWIKELFCH NERVVLTGDW KHGFFSLTAV 300
  301 GATNVGSIRI HFDQDLHTNS PSYSKGSYND LSFVTHANKE GIPMRKGEPL GEFNLGSTIV 360
  361 LIFEAPKDFN FRLKAGQKIL FGEALGSL

Type	Start	End	Confidence
Cytoplasmic	1	60	0.54
Transmembrane Helix	61	80	0.52
Non-Cytoplasmic	81	388	0.98