YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109500800
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.97
Transmembrane Helix	18	39	0.92
Non-Cytoplasmic	40	72	0.96
Transmembrane Helix	73	94	0.93
Cytoplasmic	95	106	0.81
Transmembrane Helix	107	128	0.92
Non-Cytoplasmic	129	133	0.82
Transmembrane Helix	134	155	0.92
Cytoplasmic	156	165	0.87
Transmembrane Helix	166	187	0.92
Non-Cytoplasmic	188	196	0.87
Transmembrane Helix	197	218	0.92
Cytoplasmic	219	280	0.97
Transmembrane Helix	281	303	0.89
Non-Cytoplasmic	304	318	0.93
Transmembrane Helix	319	341	0.91
Cytoplasmic	342	348	0.91
Transmembrane Helix	349	370	0.94
Non-Cytoplasmic	371	378	0.78
Transmembrane Helix	379	403	0.89
Cytoplasmic	404	414	0.89
Transmembrane Helix	415	438	0.91
Non-Cytoplasmic	439	444	0.84
Transmembrane Helix	445	464	0.96
Cytoplasmic	465	523	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSEKDQAE NKESQRNWSC SLIVAALVGA FGSSFLYGYN LSVVNAPTPY IKAFYNETWY  60
   61 RRHGQPIDPD TLTLLWSVTV SIFAIGGLVG TLMVKMIGKF LGRKYTLLVN NGFAISAALL 120
  121 MACSLQAGTF EMLIVGRFIM GVDGGIALSA LPMYLNEISP KEIRGSLGQV TAIFICIGVF 180
  181 SGQLLGLPEL LGKERTWPYL FGVIIVPALA QLASLPFLPE SPRYLLFEKH DEAGATKAFQ 240
  241 TFLGKADVSQ ELEEALAESR VQRNLRLVSV FELLRAPFVR WQVITVVITM ASYQLCGLNA 300
  301 IWFYTNSIFG KAGVPQDKIP YITLSTGGIE TLAAIFSGLV IERLGRRPLL IGGFGLMALF 360
  361 FGMLTVTLTL QDQAPWIPYL SIVCILAIIA SFCSGPGGIP FILTGEFFQQ SERPAAFIIA 420
  421 GTVNWLSNFV VGLLFPFIQK SLESYCFLVF ATICIAGAIY FYFVLPETKN RTHAEISQAF 480
  481 AKRNKAHPPE VKADSAMAEE KANSQPETDP SSTLDSYGQN RIV