YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109499816
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.39
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPGAAPRSA EPAARHGDGR KKMAAAVAAA TAASHAPLTP MARAGRRTTD GGCPGSGEGR  60
   61 GEVAGTVCGF RNMAGVCDAA APGEGGGGGA DGPERTRGRQ RLPSARGAAA APVAPMSPRP 120
  121 VTATPAASAR RPTLPRPSPS QVHPGGRRSP VTECSRPASA VAGISHIRRR SQMGNGGLSG 180
  181 GCQCQELSLL RFLSAELTRG YFLEHNEAKY TERRERVYTC MRIPRELEKL MFFGIFLCLD 240
  241 AFLYVFTLLP LRVFLALFRL LTLPCYGLRD RRLLQPAQVC DILKGVILVI CYFMMHYVDY 300
  301 SMMYHLIRGQ SVIKLYIIYN MLEVADRLFS SFGQDILDAL YWTATEPKER KRAHIGVIPH 360
  361 FFMAVLYVFL HAILIMVQAT TLNVAFNSHN KSLLTIMMSN NFVEIKGSVF KKFEKNNLFQ 420
  421 MSNSDIKERF TNYVLLLIVC LRNMEQFSWN PDHLWVLFPD VCMVIASEIA VDIVKHAFIT 480
  481 KFNDITADVY SEYRASLAFD LVSSRQKNAY TDYSDSVARR MGFIPLPLAV LLIRVVTSSI 540
  541 KVQGILSYAC VILFYFGLIS LKILNSIVLL GKSCQYVKEA KMEEKLFNPP PASTPAKPSN 600
  601 KSQSKCKSSQ GLSTEENLSA SITSQPVHQK ENVIPLLVTS NSDQFLTTPD GDEKDITQEN 660
  661 SELKHRSSKK DLLEIDRFTI CGNRID

Type	Start	End	Confidence
Signal Peptide	1	44	0.38
N-region	1	35
H-region	36	41
C-region	42	44
Cleavage Site	44	45
Non-Cytoplasmic	45	230	0.61
Transmembrane Helix	231	256	0.82
Cytoplasmic	257	276	0.56
Transmembrane Helix	277	298	0.72
Non-Cytoplasmic	299	356	0.48
Transmembrane Helix	357	386	0.71
Cytoplasmic	387	520	0.58
Transmembrane Helix	521	537	0.63
Non-Cytoplasmic	538	543	0.53
Transmembrane Helix	544	564	0.80
Cytoplasmic	565	686	0.66