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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109499315
Protein type: Globular with Signal Peptide
Type Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQRRFQLRA MQADNLSVVL LSVAWLLLAR GTTGMPQFST FHSENRDWTF NHLTVHRRTG  60
   61 AVYVGAINRV YKLTGNLTIQ VAHKTGPEED NKACYPPLIV QPCSEVLTLT NNVNKLLIID 120
  121 YSENRLLACG SLYQGVCKLL RLDDLFILVE PSHKKEHYLS SVNKTGTMYG VIVRSEGEDG 180
  181 KLFIGTAVDG KQDYFPTLSS RKLPRDPESS AMLDYELHSD FVSSLIKIPS DTLALVSHFD 240
  241 IFYIYGFASG GFVYFLTVQP ETPEGMAINS AGDLFYTSRI VRLCKDDPKF HSYVSLPFGC 300
  301 TRAGVEYRLL QAAYLAKPGE ALAQAFNISS EEDVLFAIFS KGQKQYHPSP XXLCPMCLPH 360
  361 PGHQLANQGA VAVLLPWRGQ LGAQLAAGKG CTVHQGASPH RXXLLWLGHQ PASGRLHSCG 420
  421 GTDLVHHQQG PPDLCGLLCL QWLQCGVCGD XEWQAKEDSS XWSPPWWGPI XDGLCVQRWE 480
  481 PHPPGHGLLH QSAVPICHVX ETGHQGPCGI MXTIYNLWRV SKLRGSSLWL VCPAQHVLXK 540
  541 RQMPTGLGSK SIRCQYQPVY EPXGAPQQHL CVRSQPAAQP GCEXCSQPLX GYRLCLWEPD 600
  601 XGGGAGVWES SHMHLTWTQG CPCHSSGSRL VWPGAAAEIQ RDRKDLCQHR IQVLXLQCPP 660
  661 TVPVLCXQRL PLPLVQVPEP LYTXSHHLFL PGRQDQCFRG LSTARAHRRD SDPSWGSKTN 720
  721 HSXSPKPAPT PVWPARLRMC AQHSRGCPPG PCPTFQQFQC AVPKQLVPVX RDGHQQPSSG 780
  781 LCCGVEWQLH YXQPSGPEST PLQVCSPAGK LWSLPQGXSQ VRVWLVQWGA QMYPPPALPQ 840
  841 HFXPLARLVQ PQCQVLQPPN HRDFDSIRTT XRRDSCDHPW SEPGLGLLXD RSPRAGGWSA 900
  901 LHTHPRGIHH RXADRLXDGP CPYGYHIWAC APVHWGMQAR VHDQVPPAVY ICESFCAVTQ 960
  961 PNPGTRVRRY HGDHHRPLPW CWEQRGSVPG QSDLRILWEV NEXDCLCFTP IIQWTRTSPC1020
 1021 LRECRQSPGR QQSTVRVHRX PTGPTYXARV EHHXWTHTPN HHRLQLGCNS GAKDPSQVQW1080
 1081 ERISQCMHSG KHNHPHLSGT LSDQXLPSRS GHCGAARXVW ISLXQCPILT YLXXHQVHLL1140
 1141 PQPNFXTAQP HWNLGSEARF THHPEGQKSL SSCLRRGQTQ LHSNDWRDTL YSHCVXDTTA1200
 1201 LXTSQPHRTA QGHGSRGRDG VLPWLCECHL RQLVDPASHH QHCSWWKPPS YHRHHCPHRL1260
 1261 QAQVXGKXPH TQTAPNADGQ PGVQGGAGMQ GSFCGASDRH QXANQXLGPI RNPLPGLPYL1320
 1321 CHESTVPRHR GPPCSSGAGG TRKWTAARGE SPETLRPAYQ QQGVLADLHP HTGTTAQLLH1380
 1381 ARPWECGLSH HDRSSGSPGI CHRCSQAAAL XPHXQEPGEQ EPPQAASPQD XVCGGEDADQ1440
 1441 LVCFPFTQVP KGVCWGTTLH AILCNQAADG ERPHXCYHWX GPVLPEXRQA HPAADRVQDS1500
 1501 DPELCQPXQX EXPRDPREGT KLXHHHSSQG EDPRCCIXEC SLLPAAKGCG HGPGVAPRPD1560
 1561 CQSGITGXGH YHQDRGXLEA AXHTDALPGV RQISGGSGPX ADLLLQHPCL CQHLSDIHQQ1620
 1621 IRLFLQVHRQ PRQPPVPGSH DHPRPGEWCQ GLASGKEPXP WXPEGGRPGQ QNGVXDLLDP1680
 1681 ASSHQGHPAE ICGRLVXDLV QHCAQGXCSP PSHQVHVXFP GXAGRQTQYP RHRCAAHLEK1740
 1741 QLPSTSFLGE CHQEPSICIX HPQGQHHRCL PLCGSPDLHG LLLHIRAPTG QGLTFQXVAL1800
 1801 CQGYPQLQEL GRKILCRYCQ APSHXXPRYE RLPRGAVSPA CHGVQYAERP QRDLLLCQQV1860
 1861 QXGAHRGTRA GXAGQTATTG LQGGTSHQCH VHREL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle