YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157787032, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRYSGKTCR LLFMLVLTAA FFVAELVSGY LGNSIALLSD SFNMLSDLIS LCVGLGSGYI  60
   61 ARRGPRGSSA TYGYVRAEVV GALSNAVFLT ALCFTIFVEA VLRLARPERI DDPELVLIVG 120
  121 ALGLAVNVVG LLIFQDCGAC FSRCTRGHRT RPSQPPRQGD TGGALGCPRE AATATDPGSD 180
  181 SAVTLRGASA GRKQQEGATV FSNVAGDSLN TQNEPEETTK KEKKSEALNI RGVLLHVMGD 240
  241 ALGSVIVVVT AIIFYVRPLR HEDPCNWQCY IDPSLTVVMV IIILSSAFPL IKETAVILLQ 300
  301 MVPKGVNMEE LMSQLSMVPG VSSVHEVHIW ELISGKVIAT LHIKHQEGTE YQDASRKVRE 360
  361 IFHHAGIHNV TIQFETLDLK EALEQKDFLP TCSAPCISQS CAKKLCCPPG TLPLALVNGC 420
  421 AEHNGGPNLE SYRSIEAPEV VIDVALDGCP RKQGQVHSKT QERQHCENST HF

Type	Start	End	Confidence
Cytoplasmic	1	10	0.89
Transmembrane Helix	11	32	0.90
Non-Cytoplasmic	33	41	0.80
Transmembrane Helix	42	61	0.90
Cytoplasmic	62	78	0.85
Transmembrane Helix	79	101	0.87
Non-Cytoplasmic	102	114	0.87
Transmembrane Helix	115	139	0.84
Cytoplasmic	140	232	0.96
Transmembrane Helix	233	255	0.93
Non-Cytoplasmic	256	270	0.87
Transmembrane Helix	271	291	0.82
Cytoplasmic	292	472	0.86