YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109499165, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQSRVHMLT GVVWLELVLA SLLGFVIYWF VSRDKEETLP LGDGWWGPGS KPSAKEDESI  60
   61 RPFKVETSDE EIKDLHQRID RFRASPPLEG SRFHYGFNSI YLKKVVSYWR IEFDWRKQVE 120
  121 ILNQYPHFKT KIEARRFGRF LGYTEKDIEL LYPYKEKVFY TIMRESGYLH IQATKPDTVG 180
  181 CALNDSPVGL AAYILEKFST WTKSEYLEGN GSPVLMAPSE LTESSPGPQS PLWKQRNTGP 240
  241 QPHLIPLLHR MKVFVPTGFS AFPSELLHAP EKWVKVKYPP LISYSYMERG GHFAAFEEPK 300
  301 LLAQDIREFV SLAELQ

Type	Start	End	Confidence
Cytoplasmic	1	9	0.86
Transmembrane Helix	10	31	0.92
Non-Cytoplasmic	32	316	0.95