YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109494481
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALDAKTDCP PEVRRKLPPS KMAAATEMSR QAGAPGASLP SSKMAAPSPG EAGSVLCGRR  60
   61 GRSAARALGV GPAARAAAGR ARGRVAAELP GQGLGGASGR AGEPGGRPQV RGCAARGGGQ 120
  121 SGAAGRDCPS RARKPDWLRR PFILGGGFQN PSGSVHLGGG GNLFEVFGQP PDTRAWLVIA 180
  181 VGLVRAYLAK GSYHSLYYSI EKPLKFFQTG ALLEILHCAI GIVPSSVVLT SFQVMSRVFL 240
  241 IWAVTHSVKE VQSEDSVLLF VIAWTITEII RYSFYTFSLL NHLPYIIKWA RYTLFIVLYP 300
  301 MGVTGELLTI YAALPYVRQA GLYSISLPNK YNFSFDYHAF LILVMISYIP LFPQLYFHMI 360
  361 QQRRKVLSHT EEHKKLE

Type	Start	End	Confidence
Cytoplasmic	1	140	0.89
Transmembrane Helix	141	160	0.61
Non-Cytoplasmic	161	174	0.63
Transmembrane Helix	175	189	0.70
Cytoplasmic	190	209	0.76
Transmembrane Helix	210	234	0.81
Non-Cytoplasmic	235	255	0.84
Transmembrane Helix	256	275	0.80
Cytoplasmic	276	291	0.76
Transmembrane Helix	292	314	0.90
Non-Cytoplasmic	315	336	0.90
Transmembrane Helix	337	357	0.95
Cytoplasmic	358	377	0.93