YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109494202
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGENQTVVA EFVLTGLTES PELQIPLFLI FFIIYLITMV GNLGLIALIW KDPHLHTPMY  60
   61 LLLGSLAFAD ACASSSVTPK MLVNILSKDH KILVGXVLHP VLFLWFQLYC RVSTLSNSCG 120
  121 FVSEITFLQI QHHRLFLLXN FAIIQNFLHR CFSQCPSGFN IFSFHTRFYV YDYYRLLLLC 180
  181 PFCHPENKVX ERQKQGFFHL QCPPALCVFV LWHTFPYVRA SRVWIRXTXG QDVFFILHNN 240
  241 YSLSKSFYLQ PEEQRGNSCP EKKNEI

Type	Start	End	Confidence
Cytoplasmic	1	26	0.79
Transmembrane Helix	27	50	0.91
Non-Cytoplasmic	51	58	0.65
Transmembrane Helix	59	78	0.85
Cytoplasmic	79	91	0.64
Transmembrane Helix	92	109	0.72
Non-Cytoplasmic	110	266	0.53