YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149019940, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.30
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIFRPWRLR CPALHLPSFP TFSIKWSLPS LPTDEDMCKS VTTGEWKKVF YEKMEEVKPA  60
   61 DSWDFIIDPN LKHNVLAPGW KQYLELHASG RFHCSWCWHT WQSPHVVILF HMYLDKAQRA 120
  121 GSVRMRVFKQ LCYECGTARL DESSMLEENI ESLVDNLITS LREQCYGERG GHYRIHVASR 180
  181 QDNRRHRGEF CEACQEGIVH WKPSEKLLEE EATTYTFSRA PSPTKPQAET GSGCNFCSIP 240
  241 WCLFWATVLL LIIYLQFSFR SSV

Type	Start	End	Confidence
Signal Peptide	1	23	0.34
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	236	0.62
Transmembrane Helix	237	258	0.82
Cytoplasmic	259	263	0.50