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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109499000, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.39
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLVLLLLLL ILGSAKAQVN PAICRYPLGM SGGHIPDEDI TASSQWSEST AAKYGRLDSE  60
   61 EGDGAWCPEI PVQPDDLKEF LQIDLRTLHF ITLVGTQGRH AGGHGIEFAP MYKINYSRDG 120
  121 NRWISWRNRH GKQVLDGNSN PYDVFLKDLE PPIVARFVRL IPVTDHSMNV CMRVELYGCV 180
  181 WLDGLVSYNA PAGQQFVLPG GSIIYLNDSV YDGAVGYSMT EGLGQLTDGV SGLDDFTQTH 240
  241 EYHVWPGYDY VGWRNESATN GFIEIMFEFD RVRNFTTMKV HCNNMFAKGV KIFKEVQCYF 300
  301 RSETSEWEPT AVYFPLVLDD VNPSARFVTV PLHHRMASAI KCQYHFADTW MMFSEITFQS 360
  361 DAAMYNNSGA LPTSPMAPTT FDPMLKVDDS NTRILIGCLV AIIFILLAVI VIILWRQFWQ 420
  421 KMLEKASRRM LDDEMTVSLS LPSESSMFNN NHSSSPSEQE SNSTYDRIFP LRPDYQEPSR 480
  481 LIRKLPEFAP GEEESGCSGV VKPAQPNGPE GVPHYAEADI VNLQGVTGGN TYSVPAVTMD 540
  541 LLSGKDVAVE EFPRKLLAFK EKLGEGQFGE VHLCEVEGME KFKDKDFALD VSANQPVLVA 600
  601 VKMLRADANK NARNDFLKEI KIMSRLKDAN IIRLLAVCIT EDPLCMITEY MENGDLNQFL 660
  661 SRHEPLSSGS SNATVSYANL KFMATQIASG MKYLSSLNFV HRDLATRNCL VGKNYTIKIA 720
  721 DFGMSRNLYS GDYYRIQGRA VLPIRWMSWE SILLGKFTTA SDVWAFGVTL WETFTFCQEQ 780
  781 PYSQLSDEQV IENTGEFFRD QGRQIYLPQP AVCPDSVYKL MLSCWRRETK HRPSFQEIHL 840
  841 LLLQQGAE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle