YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109498917, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.39
Transmembrane Helix	29	51	0.70
Cytoplasmic	52	56	0.46
Transmembrane Helix	57	78	0.86
Non-Cytoplasmic	79	91	0.49
Transmembrane Helix	92	114	0.84
Cytoplasmic	115	119	0.43
Transmembrane Helix	120	143	0.89
Non-Cytoplasmic	144	149	0.48
Transmembrane Helix	150	171	0.67
Cytoplasmic	172	185	0.68
Transmembrane Helix	186	209	0.83
Non-Cytoplasmic	210	217	0.67
Transmembrane Helix	218	239	0.90
Cytoplasmic	240	248	0.58
Transmembrane Helix	249	268	0.74
Non-Cytoplasmic	269	272	0.65
Transmembrane Helix	273	292	0.89
Cytoplasmic	293	304	0.74
Transmembrane Helix	305	325	0.83
Non-Cytoplasmic	326	337	0.64
Transmembrane Helix	338	359	0.85
Cytoplasmic	360	373	0.75
Transmembrane Helix	374	393	0.92
Non-Cytoplasmic	394	402	0.82
Transmembrane Helix	403	423	0.91
Cytoplasmic	424	617	0.98
Transmembrane Helix	618	638	0.89
Non-Cytoplasmic	639	649	0.69
Transmembrane Helix	650	669	0.79
Cytoplasmic	670	677	0.85
Transmembrane Helix	678	700	0.88
Non-Cytoplasmic	701	706	0.76
Transmembrane Helix	707	726	0.52
Cytoplasmic	727	909	0.61
Transmembrane Helix	910	930	0.40
Non-Cytoplasmic	931	1114	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNNSFSFWV ARNDNKPDLL CGRPADYFVV QKHFTILICA TIVLGGFSRM VLKNSEVFVM  60
   61 IILSVSGFVT GRLAYNFIEV HQIVYPLLKT PSFSLYCYFL PLIVFVAALD VDFYIVKNVF 120
  121 WQVLLTGLIS FGTAFATISY VVLKFHEDKW DLQCCLLFSI TLCIIDPLHS VNSLKMIGIS 180
  181 KMYTDIIRGE SLIICSFTCI FFGIFRGHTT NVSMFRELHV IIGLSFDIFG SAVCGYWCTR 240
  241 VIQIILTDLF SNTLTNVVLC FSLVYMTFYL VEYFGMSGIV ALVTVGLNLD SLSFKPRMEF 300
  301 IITKFLIMCS SVYEHLIYAF FGIVIGCGEI KYFRFHSLVF TVTLFVTVNF VRLLTIILVS 360
  361 PILMHSSYEY DWRWGVVITW SGIRGVFSLL LAPDIYNFSE YKLAAPHMCI FYIQALSILT 420
  421 TGINSHMMLR SAKTLGLCAL SLPRQMAVRN ATEHIQEIIR NTITLFKTEK ILTNVNWNVV 480
  481 EEKAKIEYNP ARTVPLAHIS HGPREESPTD EVLIEEARLH VAIIQMSSFE KQCNDGILGV 540
  541 EAARILIGAT KSYCPIHGKF MSISDVSTYV RARSWLIKFK NMLTYLEYHK ERVLFTVPGN 600
  601 NKLLIFVYRI IISEEFEYAT HVVTVMYIFP MIIHLWPIAR ELNVSALISI NYYYMFLYTL 660
  661 ESALKILILK RKYFLQNWNT LDFFIIVLGI VDILCMYFVK LRPDSLVLIQ FTVVIGYLRV 720
  721 IRFLPIFKII IPVLINMADV QIKKSLSLMY SITKGYVKSQ EDAKLLVRQI SGRESIYQKL 780
  781 YDILERNKRE AIRELGLIEH EGRDVVIALK TKQTIRNVIA KALKNLTFLW SRGIIDKHEG 840
  841 IEMNKVLLTK IKALNNFPMA IPPPTPDKYL PNIVWMENKD VLIEFFKERT KLTYFDYGDI 900
  901 ICREGEMPQG IFLIISGMAS LHSSSATFGI DPSPRTTDRQ SKTMYTEYCT SGDVLGELSC 960
  961 LLKREIEYTA ICETTLQAFF ISLEDLYEGF DVFWPSLEYK MWLKLALSIA NQYFESSIAG1020
 1021 EDLKFQKCVM FNHAYVETLS SYNEMTLNHV NMKLIILVYG NVINSKTEET HVAPCIIPKS1080
 1081 CEQIQGISDV SKLLVIPTSE PVKKDATSHD VGKG