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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109498802
Protein type: Globular with Signal Peptide
Type Confidence: 0.96
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAQELVHTV FLVALFHSSL AGVGTPQSES RAEEIPEGAS TLAFVFDVTG SMYDDLVQVI  60
   61 EGASKILETS LKRPKRPLYN FALVPFHDPE IGPVTITTDP KKFQYELREL YVQGGGDCPE 120
  121 MSVGAIKIAL EISLPGSFIY VFTDARSKDY RLTHEVLQLI QQKQSQVVFV LTGDCDDRNH 180
  181 IGYKVYEEIA STSSGQVFHL DKKQVNEVLK WVEEAVQASK VHLLSTDHLE HAVNTWKIPF 240
  241 DPSLKEVTVS LSGPSPVIEI RNPFGKLIKK GFGLNELLNI HNSAKVVNVK EPEAGMWTVK 300
  301 TSSSGRHSVR LTGLSTIDFR AGFSRKPTLD FKKTMSRPVQ GIPTYVLLNT SGISSPARVD 360
  361 RLELLSISGG SLKTIPVKHY PDRKPYGIWN ISDFIPPDEA FFLKVTGYDK EDYLFQRVSS 420
  421 VSFSSIVPDA PKVTMPTRTS GYYLQPGRIL CSVESLLPFT LSFVRNGIAL GVEQYLKESA 480
  481 SVPWDFPKVT LSDEGFYECI AMNSAGTGRA QTFFDVSEPP PIIQVPNNVT VTPGERAVLA 540
  541 CLVISAVDYN LTWQRSGRDV RLADSARIRT LANLSLELRS VKIGDAGEYR CVVSSEGGSA 600
  601 AASVFLTVQE KPKVTVMPRN QSFTGGSEVS IMCSATGYPK PKIVWTINEM FILGSHRYRM 660
  661 TAEGTLFIKN AVPKDAGTYS CLASNEAGTD EQTSTLRYIE APKLVVVQSE LLVALGDTTV 720
  721 MECKTSGIPP PQVKWFKGDL ELRPSTFLSI DPLMGLLKIQ ETQDLDAGDY TCVAANDAGR 780
  781 ATGSLTLDVG SPPVFIQEPS DVSMEIGSNV TLPCYVQGYP EPKIKWRRLD NMPVFSKPFS 840
  841 VSSISQLRTG ALFISNLWAS DKGTYICEAE NQFGKIQSQT TVTVTGLVAP LIGISPSKAS 900
  901 VIEGQPLTLP CTLLAGNPIP ERRWMKNSAM LVQNPYITVR SDGSLHIERV RLQDGGEYTC 960
  961 VASNVAGTNN KTTSVAVHVL PTIQHGQQIL STIEGVPVTL PCRASGIPKP SITWSKKGEL1020
 1021 ISTGNAKFSA GADGSLYVVS PGSEESGEYI CTATNAAGYA KRKVQLTVYV RPRVFGDQRG1080
 1081 LSQDKPVEIS VLAGEEATLP CEAKSLPPPI ITWAKDSQLI SPFSPRHTFL PSGSMKITET1140
 1141 RISDSGMYLC VATNIAGNVT QSVKLSVHVP PKIQHGNRHL KVQVGQRVDI PCNAHGSPPP1200
 1201 VITWFKSGRP MPFNGVQHPG SPDGMLTIEQ TTLSDAGTYT CTATNIAGSD EAEVTLHVQE1260
 1261 PPTVEDLQPP FNTPFQERLA NQRMAFPCPA KGTPKPTIKW LHNGKEVTGQ EPGVSILEDG1320
 1321 ALLVIASVTP LNNGEYICVA VNEAGTTERK YNLRVHVPPV IKDKEHVSNV SVLVNQLASL1380
 1381 YCEVEGTPSP VIMWYKDDIQ VTESSTVQIV NNGKILKLFK ASAEDTGRYS CKAINIAGTS1440
 1441 QKDFSVNVLV PPSIQGAGSP NEVSVVLNHN ITLQCPVRGT PFPAIHWFKD GKPLFLGDPN1500
 1501 IELSDRGQNL HLRNARRSDK GRYQCSVSNA AGKQAKDIKL TLYVPPSIKG GNVTTEISAL1560
 1561 LNSVVKLECE TRGLPVPAIT WYKDGQVVTS SSQALYIDKG QFLHIPRAQV SDSATYTCHA1620
 1621 SNVAGTAEKS FHVDIYVPPI IEGDLTTPSS KQVVVGQSLV LECKAVGNPP PVLTWLKDGV1680
 1681 PVKASDNIHI EAGGKKLEIL SALEVDRGQY ICVATSVAGE REIKYEVDVL VPPAVEGGDE1740
 1741 TSYFIVLANN LLELDCQVSG SPPPTIMWLK GGQLIDERDG FKILLSGRKL VIAQAQVSDT1800
 1801 GLYQCVATNV AGDRRKEFEV TVHVPPTIKS SDLPEKTVVR YKPVSLQCIA NGIPNPSITW1860
 1861 LKDDQPVNTA PGNLRIQSSG RVLQIAKALL EDAGRYTCVA TNAAGEAHQH TQLHVHEPPS1920
 1921 LDDGGKMLNE SVVVNNPIQL ECKATGSPVP VLTWYKDSHP LAGSTSATFL KRGQILEIGS1980
 1981 AQISDAGIYK CVAINSAGAT ELFYSLQVHV PPSISGSSSM VEVVVNNLAR LECEARGIPA2040
 2041 PSLTWLKDGS PVSSFSNGIQ VLSGGRILAL TSAQMSDTGR YTCVAVNAAG EKQRDFDLRV2100
 2101 YAPPNIMGEE QNVSVLISQT VELFCQSDAV PPPTLMWFKD GRPLLKRPGL SISENGSVLM2160
 2161 IEDAQAGDTG RYTCEATNVA GKTEKNYNVN IWVPPSIYGS DELVQLTAIE GNLITLLCES2220
 2221 SGIPPPNLTW KKKGSLVLAD AAGRVHILSG GRRLQISIAE KADAGLYTCV ASNVAGIAKK2280
 2281 EYNLQVYIRP SIANSGSHRP EITVIRGRSI SLECEVQGIP QPTVTWMKDG RPLSKGKGVE2340
 2341 ILDEGRVLQL KNVHVSDTGR YVCVAVNVAG MTDKRYDLSV HVPPSIIGNH GVPENISVVE2400
 2401 KSSVSLTCEA SGIPLPSITW LKDGWPVSLG SSVKILSGGR MLRLMQTRPE DAGQYTCIVR2460
 2461 NAAGEDRKMF GLSVLVPPHI VGDNTLEDIK IKEKQSVTLT CEVRGNPVPQ ITWHKDGQLL2520
 2521 QEDEVHHMMS GGRFLQITNA QVSHTGRYTC LASNIAGDKS KSFSLNVFVS PTIAGVDSDG2580
 2581 SPEDVIVILN SPTSLVCEAY SYPPATITWF KDGAPLESSR NLRILPGGRT LQILNAQEDN2640
 2641 AGRYSCVATN EAGEMIKHYE VKVYIPPIIK KGDLLGTGLS PKEVKIRVNS SLTLECEAYA2700
 2701 IPSASLRWYK DGQPLKSDHH VNIAENGHTL QIKEAQISDT GRYTCVASNL AGEDELDFDV2760
 2761 NIQVPPSFQK LWEIGNMLDT GRSGEAKDVI INNPISLHCE TNAAPPPTLT WYKDGRPLTS2820
 2821 SDRVLILPGG RVLQIPRAKV EDAGRYTCVA VNEAGEDSLQ YDIHVLLPPV IKGANSDLPE2880
 2881 EVTVLVNKSA QMECSSSGSP APRNFWQKDG QPLLEDEHHK FLSDGRVLQI LNAQITDTGR2940
 2941 YVCVAENTAG SAKKYFNLNV HVPPSVIGPN HEHLSVVVNH FISLTCEVSG FPPPDLNWLK3000
 3001 NEQPIKPNTN VLIVPGGRTL QIIRAKVSDG GEYTCVAINQ AGESKKKVSL TVHVPPSIKD3060
 3061 HGSESLSIVN VREGTSVSLE CESNAVPPPV ITWSKNGRMI PDSSNVAILT GGQMLHIRRA3120
 3121 EVADTGQYVC RAINVAGRDD KNFHLNVYVP PTIEGPETEV IVETMSNPVT LTCDATGIPP3180
 3181 PTITWLKNHK PIENSDPLEA HILSGGSKLQ IARLQRSNRG NYTCVASNME GKAQKNYILS3240
 3241 IQVPPSVAGA EVPSEVSVLL GENVELVCDA DGIPIPRLQW LRDGKPIVSG ETERVRVTTD3300
 3301 GSTLNIYRAL TSDMGKYTCV ATNPAGEEDR IFNLNVYVPP KIRGNKEEAE KLMALVDTSL3360
 3361 NIECKATGTP PPQISWLKNG LPLPISSHIR LLSAGQAIRI VRAQVSDVAV YTCVASNRAG3420
 3421 IDSKRYSLQV FVPPNMDNAM GTEEITLVKG SSTSMTCFTD GAPTPSMSWL RDGQPLALDA3480
 3481 HLTIGTQGMV LQLIKADTED TGKYTCVASN EAGEVSKHFV LKVLEPPHIN GSEGPGEVSV3540
 3541 IVNNPLELSC IASGIPAPKI SWMKDGRPFL QTEQVQTLEG GAILRVSSAQ VEDTGRYTCL3600
 3601 ASSPAGDDDK EYLVRVHVPP NIAGVDEAQD FTVLRNRQVT LECKSDAVPP PVIMWLKNGE3660
 3661 QLQATPRVRI LSGGRYLQIN NADLGDTANY TCVASNIAGK TTREFILTVN VPPSISGGPQ3720
 3721 SLVTLLNKSI ALECLAEGVP SPRITWRKDG VVLAESHARY SILENGFLHI QSAHITDTGR3780
 3781 YLCMATNVAG TDRRRIDLQV HVPPSIAAGP TNVTVTVNVQ TTLACEATGI PKPSINWRKD3840
 3841 GHLLNVDQNQ NSYRLLSSGS LIIISPSVDD TASYECTVTS DAGEDKRTVD LTVQVPPTIA3900
 3901 DEPMDFLVTR QAPAVMTCSA SGVPLPSIHW TKNGIRLLPR GDGYRILSSG AIEISAAQLN3960
 3961 HAGRYTCIAR NAAGSVHRHV TLRVQEPPFI QPQPSELDVI LNNPILLPCE ATGIPTPFIT4020
 4021 WQKEGINVIT SGKSLAVLPS GSLQISRAVQ GDAGTYMCVA QNPAGTALGK IKLNVQVPPA4080
 4081 ISSHQKEYVV TMDKPVSLLC ETEGSPPPDI TWHKDGHALT ESIRQRILNS GALQIAFAQP4140
 4141 DDAGQYTCMA ANMAGSSSMS TTLTVHVPPR IQSTEVHYTV NENSQVVLPC VADGIPTPAI4200
 4201 HWERDSVLLA NLLGKYTAQP YGELVLENVV LEDAGTYTCV ANNAAGEDTH TVTLTVHALP4260
 4261 TFTELPGDLS LNKGEQLRLS CKAVGIPLPK LTWTFNNNII PAHFDSVNGH SELVIEKVSK4320
 4321 EDSGTYVCTA ENSVGFVKAI GFVYVKEPPV FKGDYPSNWI EPLGGNAILN CEVKGDPAPT4380
 4381 IQWSRKGADV EISHRIRQLG NGSLAIYGTV NEDAGDYTCV AANEAGVVER SMSLTLQSSP4440
 4441 MITLEPVETI VDAGGRVTLD CQAAGEPQPT ITWSRQGRPI PWDNRLTMLP NSSLYIAAAR4500
 4501 KEDTSEYECV ARNLMGSVLV RVPVIVQVHG GFSLWSAWRS CSVTCGKGIQ KRSRLCNNPP4560
 4561 PANGGRPCQG SESEARQCQN KLCPVDGHWS EWSFWEECSR SCGHGNQTRT RTCSNPPAQH4620
 4621 GGRPCEGYAV ETIMCNIRPC PVHGVWNAWQ PWGSCSKSCG KGSQTRTRLC NSPPPSFGGA4680
 4681 YCNGAETQMQ VCNERHCPVD GKWAAWTSWS TCTVSCGGGT RKRTRDCSDP VPQYGGNKCE4740
 4741 GTGVQSDFCN SDPCPTHGNW SPWSGWGMCS RTCNGGQMRR YRTCDNPRPS NGGRACGGPD4800
 4801 TQIQRCNTDM CPVDGSWGTW HSWSHCSVSC GGGERTRKRL CDNPVPSKSG RSCPGDATQV4860
 4861 SRCNMQACPG GPQRARGSVI GNINDIEFGI AFLNATITDS PNSDTRIIQA TITNVPRSLG4920
 4921 PAMRKIISIL NPIYWTTAKE IGEAVNGFTL TNAVFKRETQ VEFATGEVLR MTHVARGLDS4980
 4981 DGALLLDVIV SGHVLQLHSP AEVSVKDYTE DYIQTGPGQL YAYSTRLFTI DGISVPYTWN5040
 5041 HTIFYDQAWG KMPFLVETLH ASSVESDYNQ LEETLGFKIH ASISKGDRSN QCPSGFILDS5100
 5101 AGPFCADEDE CTAGNPCSHT CHNAIGAYYC SCPKGLTIAA DGRTCQDIDE CALGGHTCHA5160
 5161 GQDCDNTIGS YRCVVHCGTG FRRTSDGLSC QDINECQESS PCHQRCFNVI GSFHCGCEAG5220
 5221 YQLKGRKCID VNECRQSVCR PDQHCKNTRG GYKCIDLCPS GMTKAENGTC IDIDECKDGT5280
 5281 HQCRYNQICE NTRGSYRCAC PRGYRSQGVG RPCVDINECD QVPKPCAHQC SNSPGSFKCI5340
 5341 CLPGQHLLGD GKSCAGLERL SSYGTQYSSY DLERFSPVRS GYQPRQHTRQ QSQLYSSYSE5400
 5401 YRNSRASFSR SRRTIRKTCP EGSEANHETC VDIDECQNRD TCQHECKNTI GSYQCVCPPG5460
 5461 YRLMLNGKTC QDVDECLEQN VRCGPNRMCF NMRGSYQCID TPCPPNYQRD PVLGFCLKNC5520
 5521 PPNDLECTLS PYALEYKLVS LPFGIAANQD LIRLVAYTQD GVMHPRTTFL MVDEEPAVPF5580
 5581 ALRDENLKGV VYTTRPLREA ETYRMKVRAL SYSANGTIEY QTTFIVYIAV SAYPY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle