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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109497980, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDIKNFLYA WCGKRKMTPA YEIRAVGNKN RQKFMCEVRV EGFNYAGMGN STNKKDAQSN  60
   61 AARDFVNYLV RINEVKSEEV PAVGIVPPPP ILSDTSDSTA STGEGLPPPM GGPLPPHLAL 120
  121 KAAENNSGVE SSSGYGSPGP TWDRGANLKD YYSRKEEQEV QATLESEEVD LNAGLHGNWT 180
  181 LENAKARLNQ YFQKEKIQGE YKYTQVGPDH NRSFIAEMTI YIKQLGRRIF AREHGSNKKL 240
  241 AAQSCALSLV RQLYHLGVIE AYSGLTKKKE GERVEPYKVF LSPDLELQLQ NVVQELDLEI 300
  301 VPPPVDPSMP VILNIGKLAH FEPSQRQNAV GVVPWSPPQS NWNPWTSSNI DEGPLAYAST 360
  361 EQISMDLKNE LAYQMEQDHN LQSVLQEREL LPVKKFEAEI LEAISQNSVV IIRGATGCGK 420
  421 TTQVPQYILD DFIQNDRAAE CNIVVTQPRR ISAVAVAERV AYERGEEPGK SCGYSVRFES 480
  481 ILPRPHASIM FCTVGVLLRK LEAGIRGISH VIVDEIHERD INTDFLLVVL RDVVLAYPEV 540
  541 RIVLMSATID TTMFCEYFFN CPIIEVYGRT FPVQEYFLED CIQMTQFIPP PKDKKKKDKE 600
  601 DDGGEDDDAN CNLICGDEYG PETKLSMSQL NEKETPFELI EALLKYIETL NVPGAVLVFL 660
  661 PGWNLIYTMQ KHLENNSHFG SHRYQILPLH SQIPREEQRK VFDPVPDGVT KVILSTNIAE 720
  721 TSITINDVVY VIDSCKQKVK LFTAHNNMTN YATVWASKTN LEQRKGRAGR VRPGFCFHLC 780
  781 SRARFDRLET HMTPEMFRTP LHEIALSIKL LRLGGIGQFL AKAIEPPPLD AVIEAEHTLR 840
  841 ELDALDANDE LTPLGRILAK LPIEPRFGKM MIMGCIFYVG DAVCTISAAT CFPEPFISEG 900
  901 KRLGYIHRNF AGNRFSDHVA LLSVFQAWDD ARMSGEEAEI RFCEQKRLNM ATLRMTWEAK 960
  961 VQLKEILINS GFPEDCLLTQ VFTNTGPDNN LDVVISLLAF GVYPNVCYHK EKRKILTTEG1020
 1021 RNALIHKSSV NCPFSSQDMK YPSPFFVFGE KIRTRAISAK GMTLVTPLQL LLFASKKVQS1080
 1081 DGQIVFIDDW IRLQISHEAA ACITALRAAM EALVVEVSKQ PNIISQLDPV NEHMLNTIRQ1140
 1141 ISRPSAAGIN LMIGSVRYGD GPRPPKMARY DNGSGYRRGY GGGGYGGGGY GGGYGSGGFG1200
 1201 GGFGSGGGGG FGGGFNSGGG GGFGSGGGGF GSGGGGFGGG GGGFSGGGGG GGFGGGRGGG1260
 1261 GGGGFGGSGG FGSGGGGYGV GGGGYGGGGG SGGYGGGSGG YGGGGGGYGG GEGYNMSPNS1320
 1321 YRGNYGGGGG GYRGGSQGGY RNNFGGDYRG SSGDYRGSGG GYRGSGGFQR RGYGGGYFGQ1380
 1381 GRGGGGGGGG GY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle