YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109498448, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.40
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	17	0.40
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	440	0.78
Transmembrane Helix	441	463	0.92
Cytoplasmic	464	481	0.94
Transmembrane Helix	482	501	0.95
Non-Cytoplasmic	502	506	0.65
Transmembrane Helix	507	523	0.76
Cytoplasmic	524	535	0.66
Transmembrane Helix	536	555	0.77
Non-Cytoplasmic	556	561	0.47
Transmembrane Helix	562	582	0.78
Cytoplasmic	583	590	0.62
Transmembrane Helix	591	611	0.91
Non-Cytoplasmic	612	618	0.65
Transmembrane Helix	619	639	0.96
Cytoplasmic	640	649	0.75
Transmembrane Helix	650	671	0.79
Non-Cytoplasmic	672	685	0.58
Transmembrane Helix	686	707	0.78
Cytoplasmic	708	786	0.59
Transmembrane Helix	787	807	0.91
Non-Cytoplasmic	808	817	0.66
Transmembrane Helix	818	846	0.69
Cytoplasmic	847	858	0.69
Transmembrane Helix	859	878	0.95
Non-Cytoplasmic	879	891	0.86
Transmembrane Helix	892	915	0.87
Cytoplasmic	916	931	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLFFALGLL VHFVFFASIF DIYFTSPLVH GMTPQVTPLP PPAKRLVLFV ADGLRADALY  60
   61 ELDEDGNSRA PFIRNVIMHE GSWGVSHTRV PTESRPGHVA LIAGFYEDVS AVAKGWKENP 120
  121 VEFDSLFNES KYTWSWGSPD ILPMFAKGAS GDHVYTYSYD AQREDFGAHD ATKLDTWVFD 180
  181 KVKDFFDAAR NNQSLFSIVN EEKVVFFLHL LGIDTNGHAH RPSSREYKDN IKKVDDGVKE 240
  241 IVSIFKHFYE DDGKTAFIFT SDHGMTDWGS HGAGHPSETL TPFVTWGAGI KFPQNVSAQQ 300
  301 YEDEFLKEWR LENWKRQDIN QADIAPLMAS LIGVPFPLNS VGILPVGYLN NTGLFKAESM 360
  361 FTNAVQILEQ FKVKMTQKKE ATLPFLFTPF KLLSDSQQLD ILRKARSYIK QEKFDDVVSL 420
  421 CEELIDLALR GLSYYHTYDR LFLGISVAVG FVGWTSYASL LIIKSHSDIP RGTRREGKKP 480
  481 HHLLPCSFIA AGVLVACFLM IQACPWTYYV YCLLPVPIWY AVLKEREVIQ ALVESLLAFP 540
  541 LSRFVAYLLV FTLGIEVLVL SFFYRYMLTA GLIVFAGWPF LTQLWTRAKI TCLSWAFFSL 600
  601 LLAVFPLMPV VGRKPDLSLV MGAGLLVLLL SLAVLATLVK RKLNLVKDEL LVLLLQVLST 660
  661 VLSMYVVYST HHSLLKKEGL PLLNQIVSWA TLASSLVVPL LSPTALWQRL TSILLSLMST 720
  721 YLLLSTGYEA LFPLVLSCLM FVWIHVEQET LQQSGVSCKQ KLASIQFTYN TDITQFRQLC 780
  781 LDDIRRAFFL VFFLLTAFFG TGNIASINSF DLASVYCFLT VFSPFMMGAL MMWKILIPFV 840
  841 LVMCAFEAVQ ITTQLSSKGL FLVVLVISDI MALHFFFLVK DSGSWLDIGT SISHYVIVMS 900
  901 MTIFLVFLNG LAQLLTTKKL QLCGKPKSHL M