YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109495568
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.68
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFTRMRPHP WPLLLPVLMW LPQSLSLDLI PYTPQITARD LGGKVTATTF SLEQPRCVFD  60
   61 EHASSNDTIW LVVAFSNASR DFQNPQTAAK IPTFPQLLTD GHYMTLPLSL DQLPCEDLTG 120
  121 GSGGVQVLRV GNDFGCYQRP YCNAPLPSQG PYSVKFLVMD AGGPPKAETK WSNPIFLHQG 180
  181 KNPNAIDTWP GRRSGCMIVI TSILPVLAGL LLLAFLAAST TRFSSLWWPE EAPEQLRIGS 240
  241 FMGKRYMTHH IPPSEAATLP VGCEPGLDPL PSLSP

Type	Start	End	Confidence
Signal Peptide	1	26	0.73
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	196	0.76
Transmembrane Helix	197	218	0.89
Cytoplasmic	219	275	0.69