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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109494755
Protein type: Transmembrane
Type Confidence: 0.69
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERQYAQDSN VLVYVRRLLA RRRKGADQDV FTGSHSSFLR QRSAGLHQVR PGVRAWPGGG  60
   61 GGRAKGRRRD RRVGSGARGG RCRLAGRAGP GSGSRCGISC PARRPSCRPP PGLALRFRPL 120
  121 LPRPHPRPPA PAPRLMEGAG SRGAGPARRQ GARGPPLLLL LWLLPGLAAA QDLNPRGRNV 180
  181 CRTPGSQVLT CCAGWRQLGD ECGIAVCEGN STCSENEVCV RPGECRCRHG YFGANCDTKC 240
  241 PRQFWGPDCK ERCSCHPHGQ CEDVTGQCTC HARRWGARCE HACQCQHGTC HPRSGACRCE 300
  301 PGWWGAQCAS ACYCSATSRC DPQTGACLCH AGWWGRSCNN QCSCNSSPCE QQSGRCQCRE 360
  361 RTFGARCDRY CQCFRGRCHP VDGTCACDPG YRGKYCREPC PAGFYGLGCR RRCGQCKGQQ 420
  421 PCTVVEGRCL TCEPGWNGTK CDQPCATGFY GEGCGHRCPP CRDGHACNHV TGKCTHCNAG 480
  481 WIGDRCETKC SNGTYGEDCA FVCSDCGSGH CDFQSGRCLC SPGVHGPHCN VTCPAGLHGV 540
  541 DCAQACSCHE ESCDPVTGAC HLETNQRKGV MGAGALLTLL LGLLLSLLGC CCACRGKDSA 600
  601 RRELTLGRKK APQRFCGSFS RISMKLPRIP LRRQKLPKVV VAHHDLDNTL NCSFLEPPSG 660
  661 LEQPSPSWSS RASFSSFDTT DEGPVYCVPH EEATAENRDP EASASLTEVP AVSLAPMGTS 720
  721 VPGDEAAALP ASSDSERSAS SVEGPGGALY ARVARREARP ARTRCEAGGL SLSPSPERRK 780
  781 PPPPDPATKP KVSWIHGKQG AVAAAPSPPP AGRKAAPSPS GRKRTPSNMS VQPPGLTEEA 840
  841 TGPASPTPPR ARARGRGPGL LEPTDAGGPP RSAPEAASML AAELRDKTRS LGRAEKPPPP 900
  901 QKAKRSVLPA STARAASASE ASASEKVAAS APEPETPRKK TPIQKPPRKK SREAAGEPSR 960
  961 AGAAPGAS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle