YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109492061
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLPLRQIG FKSPQVSTLP VISSSPPPVP QSDKPGGETE LKARREDDRV ELEAKLVSEE  60
   61 LWGTHPEQWK SRQYFFYWLI LRPGCVAILK TEQLALTTPD GHRIRHSGDS SRISEHDLLV 120
  121 YSCPGDRAEL AAARCIPRSA PLRSADKTNA EETCGLLGSG EARVESERLN DREPGRRTRA 180
  181 ASLLRTPVPK LLELGSGVRV GIAAVPSRVA APGGTSGAGD GHLLARAAGV SPPHGLHGDA 240
  241 VAPRPVEPAE RPGRGAAWRG DARRPGGGGT SWGLRMEQSA ASVPAALPYY VAFSQLLGLT 300
  301 VVAVTGAWLG LYRGGIAWES SLQFNVHPLC MVMGMIFLQG DALLVYRVFR KEAKRTTKIL 360
  361 HGLLHIFAFI IALVGLVAVF DYHKKKGYAD LYSLHSWCGI SVFVLYFMQW LVGFSFFLFP 420
  421 GASFSLRSRY RPQHTFFGAT IFLLSVGTAL LGLKEALLFK LGSKYSTFEP EGVLANVLGL 480
  481 LLICFGVVVL YILAQADWKR PTQAEEQALS MDFKTLTEGD SPSPQ

Type	Start	End	Confidence
Cytoplasmic	1	288	0.96
Transmembrane Helix	289	311	0.87
Non-Cytoplasmic	312	325	0.85
Transmembrane Helix	326	349	0.85
Cytoplasmic	350	358	0.95
Transmembrane Helix	359	380	0.91
Non-Cytoplasmic	381	398	0.83
Transmembrane Helix	399	422	0.83
Cytoplasmic	423	433	0.84
Transmembrane Helix	434	453	0.94
Non-Cytoplasmic	454	472	0.87
Transmembrane Helix	473	494	0.94
Cytoplasmic	495	525	0.98