YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109491811
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQAGPGCGR GARRGQAQAR RRKGPPGKGR SWAPGPQRRR EGVSGGCNDE HRYFRLLRKW  60
   61 DFVLFQAPPS AAGQSDRMAR RTAPLLLLTL AVGLAGSSQG DREPVYRDCV LRCEERNCSG 120
  121 DALKHFRSRQ PIYMSLAGWT CRDDCKYECM WLTVGLYLQE GYRVPQFHGK WPFSRFLFIQ 180
  181 EPASALASLL NGLASLVMLC RYRASVPASS PMYHTCMAFA WVSLNAWFWS TVFHTRDTDL 240
  241 TEKMDYFCAS AVILHSVYLC CVRTVGLQHP TVASAFGALL LLLLTGHISY LSLVHFDYGY 300
  301 NMMANVAIGL VNLAWWLVWC LRNHRRLPHT RRCMVVVVLL QGLSLLELLD FPPLFWVLDA 360
  361 HAIWHISTIP VHTLFFRFLE DDSLYLLKES EAMFKLD

Type	Start	End	Confidence
Non-Cytoplasmic	1	181	0.75
Transmembrane Helix	182	202	0.87
Cytoplasmic	203	211	0.81
Transmembrane Helix	212	231	0.91
Non-Cytoplasmic	232	245	0.78
Transmembrane Helix	246	265	0.87
Cytoplasmic	266	271	0.77
Transmembrane Helix	272	291	0.92
Non-Cytoplasmic	292	300	0.69
Transmembrane Helix	301	320	0.94
Cytoplasmic	321	332	0.80
Transmembrane Helix	333	351	0.89
Non-Cytoplasmic	352	360	0.69
Transmembrane Helix	361	379	0.77
Cytoplasmic	380	397	0.82