YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109491725
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAPLEIKNS NAFCFFPVSF ASSRFPWLLK TLVMILGLAT VVFMFRSLAL TAEFGTFKPA  60
   61 FPKPGPVDPV LKLLSEEHLR TLFTYSDIWL FPKNQCDCES GKQQMKYKYQ NAYNQKDLPA 120
  121 VNARRQAEFE HFQRREGLPR PPPLLASPNL PFGYPVHGVE VMPLHTILIP GLQYEGPDAP 180
  181 VYEVTLKASL GTLNTLADVS DNEVQGRGQR QLSISTRHRK VLNFILQHVT YTSTVYHLHK 240
  241 VDIVSMESKS SVAKFPVTIK HQTVPKLYDP GPERKLRNLV TIATKTFLRP HKFKILLQSI 300
  301 RKYYPDLTVI VTDDSKEPLE IKDDYVEYYP MPFGKGWFAG RNLAISQVTT KYVLWVDDDF 360
  361 LFSNKTKIEV LVDVLEKTEL DVVGGSVQGN TFQFRLLLER SENGDCLHQR WGSFQALDGF 420
  421 PGCTLASGVT NFFLAHTEQL RRVGFDPALQ RVAHREFFID GLGSLLVGSC PGVTVDHQTR 480
  481 TPSKDPKLAA LEMSYAKYRT NTNSQVQFKL ALHYFKNHLY CAT

Type	Start	End	Confidence
Cytoplasmic	1	26	0.76
Transmembrane Helix	27	49	0.73
Non-Cytoplasmic	50	523	0.94