YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109491620
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDRKAQSEE ALQREGRASQ PEAYRLPWNE QDDRQGILTA PMGFCTKCLC TYAKPANGYK  60
   61 AETDPEPSGS SLRKCANESI ADGASLSLKT LTSTPADVVL TTKAPKNSFE EATSINLGIW 120
  121 IKNEIWDLNY LIESHAALAS MGMQSGRGYS SEEVSQQDES QEQILINNGQ VVEAKAVLQD 180
  181 KMERFLPALY PSDVPADSLR DYFSKFGEIR ECMVMRDPTT KRSRGFGFVT FADPASVDKV 240
  241 LGQPHHELDS KTIDPKVAFP RRAQPKMVTR TKKIFVGGLS ANTVVEDVKQ YFEQFGKVED 300
  301 AMLMFDKTTN RHRGFGFVTF ENEDVVEKVC EIHFHEINNK MVECKKAQPK EVMFPPGTRG 360
  361 RARGLPYTMD AFMLGMGMLG YPNFVATYGR GYPGFAPSYG YQFPGFPAAA YGPVAAAAVA 420
  421 AARGSVLNSY SAQPNFGAPT SPAGSNPARP GGFPGANSPG PVADLYGPAS QDSGVGNYIS 480
  481 AASPQPGSGF GHGIAGPLIA TAFTNGYH

Type	Start	End	Confidence
Cytoplasmic	1	366	0.80
Transmembrane Helix	367	386	0.77
Non-Cytoplasmic	387	406	0.80
Transmembrane Helix	407	427	0.73
Cytoplasmic	428	508	0.74