YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149052931, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	160	0.97
Transmembrane Helix	161	180	0.84
Non-Cytoplasmic	181	186	0.70
Transmembrane Helix	187	208	0.85
Cytoplasmic	209	228	0.88
Transmembrane Helix	229	248	0.95
Non-Cytoplasmic	249	255	0.66
Transmembrane Helix	256	275	0.84
Cytoplasmic	276	279	0.85
Transmembrane Helix	280	301	0.80
Non-Cytoplasmic	302	306	0.63
Transmembrane Helix	307	329	0.73
Cytoplasmic	330	353	0.71
Transmembrane Helix	354	372	0.72
Non-Cytoplasmic	373	376	0.65
Transmembrane Helix	377	399	0.81
Cytoplasmic	400	408	0.83
Transmembrane Helix	409	427	0.71
Non-Cytoplasmic	428	442	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASPHTISS RLLTGSVGRS VWYLERRAIQ GLPHRVTRLF RNVTNQWVTV QHLSFLKRMY  60
   61 VTQLHRGLNQ RVKPKPAPPA SPLLEHTSSG QARAEVDELP PFPAPSLPLS QKPNELMELE 120
  121 ATSIVDHSLD TAKEQKEERQ WKEMKLHTDD LPGILARLSK IKLTALVVST TSAGFALAPC 180
  181 PFDWSCFLLT SLGTGLASCA ANSINQFFEV PFDSNMSRTK NRPLVRGQIS PLLAVSFATC 240
  241 CAVPGVALLT WGVNPLTGAL GVFNIFLYTC CYTPLKRVSI ANTWVGAVVG AIPPVMGWTA 300
  301 ATGSLDAGAL LLGGILYSWQ FPHFNALSWG LREDYSRGGY CMMSVTHPAL CRRVALRHCL 360
  361 ALIALSTTAP VLDITTWVFP VISLPINLYI SYLGFRFYVD ADRKSSRKLF FCSLWHLPLL 420
  421 LLLMLTCKQR PGQEGDKGEA PS