YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109491310, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.83
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTAMGLGLV FSLLLFWTRE IQGSTLDPAG QHVCIGSSPS ELQCCSGWRQ KDQECTIPIC  60
   61 EGPDACKKDE VCVKPGLCRC KPGFFGAHCS SRCPGQYWGP DCRETCPCHP RGQCEPATGV 120
  121 CQCQPNYWGK LCEFPCTCGP HGKCDPKTGL CHCDPGWWSP TCRRPCQCNP LARCDQVTGA 180
  181 CICPTGWWGH RCSFSCNCHT SPCLQDSGRC TCLQGWWGPE CSRRCQCVRG QCSVTSGHCS 240
  241 CPPGFQGALC ELPCKPGRYG AQCKESCGHC EPNATCSPVT GNCESCKPGW NGTQCKQPCP 300
  301 PGTFGERCTG KCPRCRLEEP CQVETGHCQR CDPGWLGHRC EKPCPLGTFG KGCSSTCPAC 360
  361 VQGTCNAVTG ECVCSAGYWG TSCNSSCPSG FHGNNCSMPC QCPEGLCHPE SGACQLGPHG 420
  421 KNALIVGILV PLLLLLMGII CCVYCCSASR LDPKDRPERN GAAFFRMKQQ VWGALTSLGS 480
  481 ALPCGSLSNY KLPWVTVSHH DPEVPFNHSF IEPPSAGWAS DDSFSSDPDS GEEDEAHAYF 540
  541 MPPREETVPM TQEESPAASL PGGPFPPPED ASTPFPIPRT SSLARAKRPS VSFAEGTKFA 600
  601 PQNGRSSGDL SSPIRKPKRL SRGAQPRPEG QEAEESTGPE QENPEEDVPT ATSSGDAATS 660
  661 HGQLPPGSRT VTECVETTDG GIQESSGSVA TIYMLAGTPQ KPEGPVWSVF RRLGNYQKDQ 720
  721 AAPKVKSAIP KPLRRSLGRN QASSGLSQSS GSAPGAVLSG AMESTAVKPE EASRGLGDGI 780
  781 ESLGTVQEPV VGSSSPEQGS QKQAEEQEQE EPLYENVVPM LQH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle