YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109491251
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILENYNFQS SLHGALSLNS LKSGNMMKNW LLILTLFLLK FIERSESTVG LSAPPTVKLV  60
   61 NGSSTNVSIT LGHPLNSTLV ITFEITFSSK NLTIVELPDE VIVPRGEKNA SFQVTSQNIG 120
  121 QVTVYLHGNH SNQTCPRIQF LVIHSRIVSV INQVIGWIYF MAWSVSFYPQ VIQNWRRKSV 180
  181 VGLSFDFLAL NLTGFVAYSV FNIGLLWVPY IQEEFLLKYP NGVNPVDIND AFFSLHAVAL 240
  241 TLIVILQCCL YERGNQRVSR PSIGFLVLAW LFILVTMIVA AVGVTTWLQF LFCFSYIKLI 300
  301 ITLIKYFPQA YMNFYYKSTK GWSIGGVLLD FTGGSFSLLQ MFLQSYNNDQ WTLIFGDPTK 360
  361 FGLGVFTIFF DIVFFIQHFY LYRKKPGYDQ LD

Type	Start	End	Confidence
Non-Cytoplasmic	1	148	0.80
Transmembrane Helix	149	167	0.77
Cytoplasmic	168	186	0.71
Transmembrane Helix	187	207	0.87
Non-Cytoplasmic	208	231	0.90
Transmembrane Helix	232	251	0.96
Cytoplasmic	252	261	0.89
Transmembrane Helix	262	282	0.93
Non-Cytoplasmic	283	287	0.66
Transmembrane Helix	288	307	0.88
Cytoplasmic	308	320	0.80
Transmembrane Helix	321	343	0.89
Non-Cytoplasmic	344	360	0.89
Transmembrane Helix	361	381	0.93
Cytoplasmic	382	392	0.94