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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109490590, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGRAGVARF CLLALALQLQ WPLAACEPEW TTRGSKEDSP PLQHELIIPQ WRTSESPRGG  60
   61 KHPLTAELRV MAEGRELILD LEKNEHLFAP AYTETCYTAS GNPQTTTLKS EDHCFYHGTV 120
  121 RKVDESSVTL STCRGIRGLI IVRSNLSYII EPVPNSDNQH RIYRSEHLKL PPGNCGFEHS 180
  181 RPTSKDWTLQ FTHQTKKQPR RMKREDLHSM KYVELYLVAD YAEFQKNRHD QDATKHKLME 240
  241 IANYVDKFYR SLSIRIALVG LEVWTHGDKC EVSENPYSTL WSFLSWRRKL LTQKSHDNAQ 300
  301 LITGRSFQGT TIGLAPLMAM CSVYQSGGVS MDHSENAIGV ASTVAHEIGH NFGMSHDSAH 360
  361 CCSTSAADGG CIMAAATGHP FPKVFSSCNR KELDRYLQSG GGMCLSNMPD TRTLYGGRRC 420
  421 GNGYLEDGEE CDCGEEDECK NPCCNASNCT LKEGAECAHG SCCHQCKLVA PGTQCREQVR 480
  481 QCDLPEFCTG KSPHCPTNYY QMDGTPCEGG QAYCYNGMCL TYQEQCQQLW GPGARPALDL 540
  541 CFERVNAAGD TYGNCGKGLN GKYRKCSPRD AKCGKIQCQS TQARPLESNA VSIDTTITLN 600
  601 GRRIHCRGTH VYRGPEEEEG EGDMLDPGLV MTGTKCGHNH ICFEGQCRNT SFFETEGCGK 660
  661 KCNGHGVCNN NKNCHCFPGW APPFCNTPGD GGSIDSGPLP PKSAGPVIAG VFSALFVLAV 720
  721 LVLLCHCYRQ SHKLGKPSAL PFKLRQQFSC PFRVSQNGGT GHANPTFKLQ TPQGKRKVTN 780
  781 TPETLRKPSH PPPRPPPDYL RVESHPAPLP AHLNRAAGSS PEAGAQIERK ESARRPPPSR 840
  841 PMPPAPNCLL SQDFSRPRPP QKALPANPVP GQRTVPRPGG TSLFHPPTTG PQPPRPPAVS 900
  901 VPKVSPRKDQ RRSVWLRKQF LCSRGLN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle