YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109490458
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALGRRKGRP GEAAAPNGLR GASLPGGGRR VASGECRAGW RGRGGRGGVG SGLGPTRRCG  60
   61 PPGLQRSHRL GGTMPFDFRR FDIYRKVPKD LTQPTYTGAI ISICCCLFIL FLFLSELTGF 120
  121 ITTEVVNELY VDDPDKDSGG KIDVSLNISL PNLHCELVGL DIQDEMGRHE VGHIDNSMKI 180
  181 PLNNGVGCRF EGQFSINKVP GNFHVSTHSA TAQPQNPDMT HIIHKLSFGD TLQVQNVHGA 240
  241 FNALGGADRL TSNPLASHDY ILKIVPTVYE DKSGKQRYSY QYTVANKEYV AYSHTGRIIP 300
  301 AIWFRYDLSP ITVKYTERRQ PLYRFITTIC AIIGGTFTVA GILDSCIFTA SEAWKKIQLG 360
  361 KIH

Type	Start	End	Confidence
Cytoplasmic	1	94	0.85
Transmembrane Helix	95	114	0.88
Non-Cytoplasmic	115	324	0.88
Transmembrane Helix	325	348	0.75
Cytoplasmic	349	363	0.68