YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109487858, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLVGGAGSA PPRAPPPQPT RAPGRRRQRQ QHPQHQQPQH QPWEVSGRAG RWDKRTEGTG  60
   61 PAMEGASFGA GRAGAAFDPV SFAQRPQTLL RVVSWVFSIA VFGPIVNEGY VNSDSGPELR 120
  121 CVFNGNAGAC RFGVVLGLGA FIACVAFLLL DVRFQQISSV RDRRRAVLLD LGFSGVWSFL 180
  181 WFVGFCFLTN QWQRTAPGPG TAQAGDAARA AIAFSFFSIL SWVALTVKAL QRFRLGTDMS 240
  241 LFATDQLGTG AAQAYPGYPV GSGVEGTETY QSPPFTETLD TSPKGYQVPA Y

Type	Start	End	Confidence
Cytoplasmic	1	88	0.98
Transmembrane Helix	89	107	0.91
Non-Cytoplasmic	108	128	0.88
Transmembrane Helix	129	150	0.91
Cytoplasmic	151	166	0.88
Transmembrane Helix	167	189	0.90
Non-Cytoplasmic	190	206	0.93
Transmembrane Helix	207	227	0.91
Cytoplasmic	228	291	0.95