YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109490297, gi...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.17
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	42	0.90
Non-Cytoplasmic	43	262	0.96
Transmembrane Helix	263	283	0.83
Cytoplasmic	284	303	0.80
Transmembrane Helix	304	326	0.92
Non-Cytoplasmic	327	344	0.80
Transmembrane Helix	345	364	0.95
Cytoplasmic	365	372	0.61
Transmembrane Helix	373	393	0.87
Non-Cytoplasmic	394	404	0.65
Transmembrane Helix	405	423	0.58
Cytoplasmic	424	924	0.57
Transmembrane Helix	925	944	0.64
Non-Cytoplasmic	945	964	0.55
Transmembrane Helix	965	979	0.17
Cytoplasmic	980	1099	0.60
Transmembrane Helix	1100	1120	0.93
Non-Cytoplasmic	1121	1140	0.68
Transmembrane Helix	1141	1164	0.85
Cytoplasmic	1165	1180	0.70
Transmembrane Helix	1181	1203	0.88
Non-Cytoplasmic	1204	1212	0.62
Transmembrane Helix	1213	1233	0.92
Cytoplasmic	1234	1302	0.67
Transmembrane Helix	1303	1324	0.80
Non-Cytoplasmic	1325	1704	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVLRQLRLL LWKNYTLKKR KVLVTVLELF LPLLFSGILI WLRLKIQSEN VPNATVYPDQ  60
   61 HIQELPLFFS FPPPGGSWEL AYVPSHSDAA RTITEAVRRE FMIKMRVHGF SSEKDFEDYV 120
  121 RYDNHSSNVL AAVVFEHTFN HSKDPLPLAV RYHLRFSYTR RNYMWTQTGN LFLKETEGWH 180
  181 TASLFPLFPS PGPREPSSPD GGEPGYIREG FLAVQHAVDK AIMHYHANAS AHQLFQKLTV 240
  241 ITKRFPFPPY ISDPFLIAIQ YQLPLLLMLS FTYTSLTIIR AVVQEKEKKL KEYMRMMGLS 300
  301 SWLHWSAWFL MFLLFSLIVV SFMTLLFCVK VKKDIAVLSN SDPSLVLAFL LCFAISSISF 360
  361 SFMVSTFFSK ANMAATVGGF LYFFTYTPYF FVAPRYNWMT LSQKLLSCLL SNVAMAMGAQ 420
  421 LIGKFEAKGT GIQWCDLLNP VNVDDDFCFG QVLGMLLLDS VLYGLVTWYV EAVFPGQFGV 480
  481 PQPWYFFLMP SYWCGNPRTV VGKEEEGGDP EKAFRTEYFE AEPEDLAAGI KIKHLSKVFQ 540
  541 VGNKDKMGIR DLTLNLYEGQ ITVLLGHNGA GKTTTMSMLT GLFPPTSGHA YIRGYEISQD 600
  601 MVQIRKSLGL CPQHDVLFDN LTVAEHLYFY AQLKGLSVQK CPEEVKQMLH TLGLEDKRDS 660
  661 RSKFLSGGMK RKLAIGIALI AGSKVLMLDE PTSGMDAVSR RAIWDLLQQQ KSDRTVLLTT 720
  721 HFMDEADLLG DRIAILAKGE LQCCGSSLFL KQKYGAGYHM TLVKEPHCNP EGISQLVHHH 780
  781 VPNAMLESHA GAELSFILPK ESTHRFESLF AKLEKKQKEL GIASFGASVT TMEEVFLRVG 840
  841 KLVDTSMDIQ AIQLPALQYQ HERRASDWAL DSNLCGVMDP TNGIGALIEE EEVLVKLNTG 900
  901 LALHCQQFWA MFLKKAAYSW REWRMVAAQI LVPVTCLTLA LLAINYTSEI FDDPPLKLSL 960
  961 NEYGTTVVPF SVPGTSRLGQ QLSEHLRDML QAERQEPREV LGDLEEFLVF RASVEGGGFN1020
 1021 ERCLVATSFK DSGERTVVTA LFNNQAYHSP ATALAIVDNL LFKLLCGPRA SIEISNYPQP1080
 1081 RSTLQVAKDQ FNEGRKGFDI ALNLLIAMAF LASTFSILAV SERAVQAKHV QFVSGVHVAT1140
 1141 FWLSALLWDL ISFLVPSLLL LVVFRAFDVH AFTRDGHMAD LLLLLMLYGW AIIPLMYLLS1200
 1201 FFFSAASTAY TRLTIFNILS GIATFIVVTI MRIPAVKLEE LSRTLDHVFL VLPNHCLGMA1260
 1261 VSNFYENYET RRYCTSSEVA THYCKKYNIQ YQENFYAWST PGIGKFVTSM AASGGIYLTL1320
 1321 LFLIETNLLW RLRTFVCAFR RRWTLAELQN RTSVLPEDQD VADERSRVLV PSLDSMLDTP1380
 1381 LIINELSKVY DQRAPLLAVD RISLAVQKGE CFGLLGFNGA GKTTTFKMLT GEETITSGDA1440
 1441 FVGGYSISSD IGKVRQRMGY CPQFDALLDH MTGREMLVMY ARLRGIPERL IDACVENTLR1500
 1501 GLLLEPHANK LVKTYSGGNK RKLSTGIALI GEPAVIFLDE PSTGMDPVAR RLLWDTVARA1560
 1561 RESGKAIVIT SHSMEECEAL CTRLAIMVQG QFKCLGSPQH LKSKFGSGYS LQAKVRSEGK1620
 1621 QEVLEEFKAF VDLTFPGSVL EDEHQDMVHY HLPGCDLSWA KVFGILEKAK EKYGVDDYSV1680
 1681 SQISLEQVFL SFAHLQPPTT EDGR