YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109489619, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	117	0.92
Transmembrane Helix	118	136	0.96
Non-Cytoplasmic	137	142	0.76
Transmembrane Helix	143	164	0.94
Cytoplasmic	165	171	0.81
Transmembrane Helix	172	195	0.87
Non-Cytoplasmic	196	215	0.85
Transmembrane Helix	216	235	0.57
Cytoplasmic	236	239	0.43
Transmembrane Helix	240	263	0.80
Non-Cytoplasmic	264	280	0.59
Transmembrane Helix	281	301	0.87
Cytoplasmic	302	787	0.66
Transmembrane Helix	788	811	0.83
Non-Cytoplasmic	812	819	0.61
Transmembrane Helix	820	844	0.83
Cytoplasmic	845	861	0.69
Transmembrane Helix	862	884	0.90
Non-Cytoplasmic	885	891	0.65
Transmembrane Helix	892	912	0.90
Cytoplasmic	913	977	0.43
Transmembrane Helix	978	997	0.83
Non-Cytoplasmic	998	1354	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSPHQQLL HHHSTEVSCD SSGDSNSVRV KINPKQLSSN THPKHCKYSI SSSCSSSGDS  60
   61 GGLPRRVGGG GRLRRQKKLP QLFERASSRW WDPKFDSVNL EEACLERCFP QTQRRFRYAL 120
  121 FYVGFACLLW SIYFAVHMRS KVIVMVVPAL CFLVVCVGFF LFTFTKLYAR HYAWTSLALT 180
  181 LLVFALTLAA QFQVWTPLSG RVDSPNHTLT AKAADTCLSQ VGSFSMCIEV LFLLYTVMHL 240
  241 PLYLSLFLGV VYSVLFETFG YHFRNEDCFP SPDPGALHWE LLSRALLHVC IHAIGIHLFV 300
  301 MSQVRSRSTF LKVGQSIMHG KDLEVEKALK ERMIHSVMPR IIADDLMKQG DEESENSVKR 360
  361 HATSSPKNRK KKASIQKAPI AFRPFKMQQI EEVSILFADI VGFTKMSANK SAHALVGLLN 420
  421 DLFGRFDRLC EETKCEKIST LGDCYYCVAG CPEPRADHAY CCIEMGLGMI KAIEQFCQEK 480
  481 KEMVNMRVGV HTGTVLCGIL GMRRFKFDVW SNDVNLANLM EQLGVAGKVH ISEATAKYLD 540
  541 DRYEMEDGRV MERLGQSVVA DQLKGLKTYL ISGQRAKESH CSCAEALLSG FEVIDDSRVS 600
  601 SGPRGQGTAS PGSVSDLAQT VKTFDNLKTC PSCGITFAPK SEAGAEGGAV QNGCQDEPKA 660
  661 STKASGGPNS KTQNGLLSPP AEEKLTNSQT SLCEILQEKG RWAGVSLDQS ALLPLRFKNI 720
  721 REKTDAHFVD VIKEDSLMKD YFFKPPISQF SLNFLDQELE QSYRASYQEE VIKNSPVKTF 780
  781 ASATFSSLLD VFLSTTVFLI LSITCFLKYG ATATPPPPAA LAVFGADLLL EVLSLIVSIR 840
  841 MVFFLEDVLT CTKRLLEWIA GWLPRHCIGA ILVSLPALAV YSHITSEFET NINFTMLTGS 900
  901 AVLVAVVHYC NFCQLSSWMR SSLATLVGAG PLLLLYISLC QDSSIVMSPL DTAQNFSASE 960
  961 RSPCNSSVLQ DGRRPASLIG KELILTFFLL LLLVWFLNRE FEVSYRLHYH GDVEADLHRT1020
 1021 KIQSMRDQAD WLLRNIIPYH VAEQLKVSQT YSKNHDSGGV IFASIVNFSE FYEENYEGGK1080
 1081 ECYRVLNELI GDFDELLSKP DYNSIEKIKT IGATYMAASG LNTAQCQEGG HPQEHLRILF1140
 1141 EFAKEMMRVV DDFNNNMLWF NFKLRVGFNH GPLTAGVIGT TKLLYDIWGD TVNIASRMDT1200
 1201 TGVECRIQVS EESYRVLSKM GYDFDYRGTV NVKGKGQMKT YLYPKCTDNG VVPQHQLSIS1260
 1261 PDIRVQVDGS IGRSPTDEIT NLVPSVQYLD KASLGSDDGA QTKEATLSSK RPWREPVKAE1320
 1321 ERFRFGKAIE KEDCEDTGAE EANELTKLNV SKSV