YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109488129
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDRHKFEVC AAAKSFTSWR RFKQLEQDMS FQKKGILFPA HTDLNFFSSR ARPEPVRSPV  60
   61 MRSPGPASRP TQAEPGDNKV SLQSYSDTAT TKPRTTAGCT CGLLTGTLGN NPSAEKGHIW 120
  121 DSMRRTALIL GLGLLLLAAF WNSITWYPQR FWGASGDFWQ TRWETLLSTF EGNEWILYII 180
  181 GVVLVPGLCF WGFNGLLLMV DRTGKPTFIS RYRIQLDKNE PVDPVKLRQS IRTVIFNQSV 240
  241 ISFPMLVILY PFLKWTGDPC CRELPTFHWI LVELVLFTLV QEILFYYSHR LFHHPKLFKK 300
  301 VHKKHHEWTT PIGLISIYAD PIEHVVSNML PVMVGPLAMG SHLSSITVWL SLVLIVSSIT 360
  361 HCGYHLPFLP SPEFHDYHHL KFNQCYGVLG VMDHLHGTDV MFKQTKAYER HVILLGFTPL 420
  421 SESIPDPPKK TGSALGPSGP LPHQ

Type	Start	End	Confidence
Cytoplasmic	1	125	0.99
Transmembrane Helix	126	146	0.93
Non-Cytoplasmic	147	174	0.95
Transmembrane Helix	175	198	0.91
Cytoplasmic	199	233	0.96
Transmembrane Helix	234	253	0.94
Non-Cytoplasmic	254	266	0.86
Transmembrane Helix	267	287	0.93
Cytoplasmic	288	307	0.89
Transmembrane Helix	308	326	0.58
Non-Cytoplasmic	327	342	0.50
Transmembrane Helix	343	364	0.83
Cytoplasmic	365	444	0.67